View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12919_low_1 (Length: 582)
Name: NF12919_low_1
Description: NF12919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12919_low_1 |
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| [»] scaffold0047 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 4e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 16 - 343
Target Start/End: Original strand, 2312859 - 2313184
Alignment:
| Q |
16 |
atacactttatactcaccagttgtctttgagcatgcatttcaatcattagccaacagaccttcattcaaatatcagtttgacctttgaatccaatgtcaa |
115 |
Q |
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||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| || |
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| T |
2312859 |
atacactttgtactcaccggttgtctttgagcatgcatttcaatcattagccaacaggccttcgatcaaatatcagtttgacctttgattccaatgtgaa |
2312958 |
T |
|
| Q |
116 |
aatataaaatacttcacgccaaggttaatgaaactacaaaaatgataacaaacacttcaatcaataacttttattagcacctaaggaactaataaatgat |
215 |
Q |
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| T |
2312959 |
attat-aaatacttcacgtctcagctaatgaaactacaaaaatgatatcaaacactttaatcaataacttttattagcgcctaaggagctaatatatgat |
2313057 |
T |
|
| Q |
216 |
acatatttatgcacttatacagtgacttcctccacaatacaaaagcccaactatcaaaatttagttgtcaataattaagatgcaaatatatgtctactat |
315 |
Q |
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| T |
2313058 |
acatacacacacactcatatagtgacttccaccacaaca-gaaaggccaactatcacaatttagttgtcaataattaagatgcaaatatatgtctatcat |
2313156 |
T |
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| Q |
316 |
ttacattaaataggcatcagtttgaaca |
343 |
Q |
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|||||||||||||||| ||||| |||| |
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| T |
2313157 |
gtacattaaataggcataagtttaaaca |
2313184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 446
Target Start/End: Original strand, 30833652 - 30833724
Alignment:
| Q |
372 |
taatcaaatggcaaccaagaaagacaacaattctgcaaaagagataaaaaagaaggattattaagttaaagactt |
446 |
Q |
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| T |
30833652 |
taatcaaatggcaaccaagaaagacaacaatcttgcataggag--aaaaaaaaagggttattaagttaaagactt |
30833724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 4e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 16 - 343
Target Start/End: Original strand, 9261983 - 9262308
Alignment:
| Q |
16 |
atacactttatactcaccagttgtctttgagcatgcatttcaatcattagccaacagaccttcattcaaatatcagtttgacctttgaatccaatgtcaa |
115 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| || |
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| T |
9261983 |
atacactttatactcatcggttgtctttgagcatgcatttcaatcattagccaacaggccttcgatcaaatatcagtttgacctttgattccaatgtgaa |
9262082 |
T |
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| Q |
116 |
aatataaaatacttcacgccaaggttaatgaaactacaaaaatgataacaaacacttcaatcaataacttttattagcacctaaggaactaataaatgat |
215 |
Q |
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| T |
9262083 |
attat-aaatacttcacgtctcagctaatgaaactataaaaatgatatcaaacactttaatcaataacttttattagcgcctaaggagctaatatatgat |
9262181 |
T |
|
| Q |
216 |
acatatttatgcacttatacagtgacttcctccacaatacaaaagcccaactatcaaaatttagttgtcaataattaagatgcaaatatatgtctactat |
315 |
Q |
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|||||| | |||| ||| |||||||||| |||||| | |||| |||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
9262182 |
acatatacacacactcatatagtgacttccaccacaaca-gaaaggccaactatcacaatttagttgtcaataattaagatgcaaatatatgtctatcat |
9262280 |
T |
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| Q |
316 |
ttacattaaataggcatcagtttgaaca |
343 |
Q |
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| T |
9262281 |
gtacattaaataggcataagtttaaaca |
9262308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 277 - 366
Target Start/End: Original strand, 18851760 - 18851849
Alignment:
| Q |
277 |
tagttgtcaataattaagatgcaaatatatgtctactatttacattaaataggcatcagtttgaacacatcttgttctatcctagaattt |
366 |
Q |
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| T |
18851760 |
tagttgtcaataattaagatgcaaatatatgtctattatgtacattaaataggcatcagtttgaacacatcttgctctatcctagaattt |
18851849 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 71; Significance: 7e-32; HSPs: 2)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 263 - 365
Target Start/End: Original strand, 60889 - 60991
Alignment:
| Q |
263 |
caactatcaaaatttagttgtcaataattaagatgcaaatatatgtctactatttacattaaataggcatcagtttgaacacatcttgttctatcctaga |
362 |
Q |
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||||||||| ||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||| |||||||||| ||||||||||| ||||||||| | |
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| T |
60889 |
caactatcacaatttagttgtcaataattaagatggaaatatatgtctattatgtacattaaatatgcatcagtttcaacacatcttgctctatcctata |
60988 |
T |
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| Q |
363 |
att |
365 |
Q |
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||| |
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| T |
60989 |
att |
60991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 60742 - 60849
Alignment:
| Q |
110 |
tgtcaaaatataaaatacttcacgccaaggttaatgaaactacaaaaatgataacaaacacttcaatcaataacttttattagcacctaaggaactaata |
209 |
Q |
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|||||||||||||||||||||||||| | | |||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
60742 |
tgtcaaaatataaaatacttcacgcctaagctaatgaaattacaaaaatgat-------------atcaataacttttattagcacctaaggaactgata |
60828 |
T |
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| Q |
210 |
aatgatacatatttatgcact |
230 |
Q |
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||||||| ||| ||| |||| |
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| T |
60829 |
tatgatacgtatatatacact |
60849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 501
Target Start/End: Complemental strand, 4411538 - 4411498
Alignment:
| Q |
461 |
aaacacgcatttgtaacccaaaaagaacatgggtggtgaaa |
501 |
Q |
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| T |
4411538 |
aaacacacatttgtaacccaaaaagaacatgagtggtgaaa |
4411498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 503
Target Start/End: Complemental strand, 6744058 - 6744016
Alignment:
| Q |
461 |
aaacacgcatttgtaacccaaaaagaacatgggtggtgaaagt |
503 |
Q |
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|||||| |||||||||| ||||||||||||| ||||||||||| |
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| T |
6744058 |
aaacacacatttgtaactcaaaaagaacatgagtggtgaaagt |
6744016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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