View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12919_low_10 (Length: 253)
Name: NF12919_low_10
Description: NF12919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12919_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 5455092 - 5454869
Alignment:
| Q |
11 |
cagagatggtgggagtggctgcatactttggtttcacaacaatattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggca |
110 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5455092 |
cagagatgatgggagtggctgcatactttggtttcacaaca---ttgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggca |
5454996 |
T |
|
| Q |
111 |
tcttcagaacttggtattttcttttcttattgcatattttgtcttttcggttagatatatagcatagacttatatatttcaccatttgtcttgatattat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5454995 |
tcttcagaacttggtattttcttttcttattacatattttgtcttttcagttagatatatagcataaacttatatatttcaccatttgtcttgatattat |
5454896 |
T |
|
| Q |
211 |
taagcattgctgaaaacttgaaattac |
237 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
5454895 |
taagcattgctgaaaacttgaaattac |
5454869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 5490266 - 5490046
Alignment:
| Q |
14 |
agatggtgggagtggctgcatactttggtttcacaacaatattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggcatct |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5490266 |
agatggtgggagtggctgcatactttggtttaacaaca---ttgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggcatct |
5490170 |
T |
|
| Q |
114 |
tcagaacttggtattttcttttcttattgcatattttgtcttttcggttagatatatagcatagacttatatatttcaccatttgtcttgatattattaa |
213 |
Q |
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|
|||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||| | ||| |||||||||||||||| ||||||||||||| |
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| T |
5490169 |
tcagaacttggtattttcatttcttattacatattttgtcttttcagttagatatatagcataaattta-atatttcaccatttgtgttgatattattaa |
5490071 |
T |
|
| Q |
214 |
gcattg-ctgaaaacttgaaattac |
237 |
Q |
| |
|
||| || ||||||||||||||||| |
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|
| T |
5490070 |
gcactgtttgaaaacttgaaattac |
5490046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 54 - 237
Target Start/End: Complemental strand, 5446493 - 5446310
Alignment:
| Q |
54 |
attgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggcatcttcagaacttggtattttcttttcttattgcatattttgtc |
153 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| ||||||||||| |
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| T |
5446493 |
attgttgacatgagaatacatcaagaccaaggacaagacatttacatacggctggcatcttcagaacttggtattttcatttgttattacatattttgtc |
5446394 |
T |
|
| Q |
154 |
ttttcggttagatatatagcatagacttatatatttcaccatttgtcttgatattattaagcattgctgaaaacttgaaattac |
237 |
Q |
| |
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|||| ||||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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|
| T |
5446393 |
ctttcagttagatatatagcataaatttacatatttcaccatttgtgttgatattattaagcatccttgaaaacttgaaattac |
5446310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 11 - 212
Target Start/End: Complemental strand, 5503082 - 5502886
Alignment:
| Q |
11 |
cagagatggtgggagtggctgcatactttggtttcacaacaatattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggca |
110 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||| |||| |||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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|
| T |
5503082 |
cagagatggtgggagtggctgcttactttggtttgacaaca---ttgtcgacatgagaaaacatccagaccaaggacaagacatttacatacggctggca |
5502986 |
T |
|
| Q |
111 |
tcttcagaacttggtattttcttttcttattgcatattttgtcttttcggttagatatatagcatagacttatatatttcaccatttgtcttgatattat |
210 |
Q |
| |
|
|||||||| |||||||||||| ||| |||| ||||||||||| |||| ||||| |||||||||| | ||| |||||||||||||||| |||||||||| |
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|
| T |
5502985 |
tcttcagagcttggtattttcatttgctattacatattttgtcctttcagttag--atatagcataaatttacatatttcaccatttgtgttgatattat |
5502888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 11 - 214
Target Start/End: Complemental strand, 20343712 - 20343511
Alignment:
| Q |
11 |
cagagatggtgggagtggctgcatactttggtttcacaacaatattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggca |
110 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||| |||| |||| |||||||||||||||||| ||||||||||||||||||||| |||||| | ||| |
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|
| T |
20343712 |
cagagatggtgggagtggttgcttactttggtttgacaa---tattttggacatgagaaaacatcgagaccaaggacaagacatttatatacggctagca |
20343616 |
T |
|
| Q |
111 |
tcttcagaacttggtattttcttttcttattgcatattttgtcttttcggttagatatatagcatagactt-atatatttcaccatttgtcttgatatta |
209 |
Q |
| |
|
||||||||||||||||||||| |||| |||| ||| |||| |||| | ||||||||||| ||| | | || |||||||||| ||||| |||||||| || |
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|
| T |
20343615 |
tcttcagaacttggtattttcatttcctattacatctttttcctttccagttagatatattgcacaaatttcatatatttcagcatttatcttgatagta |
20343516 |
T |
|
| Q |
210 |
ttaag |
214 |
Q |
| |
|
||||| |
|
|
| T |
20343515 |
ttaag |
20343511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 199
Target Start/End: Complemental strand, 5525919 - 5525736
Alignment:
| Q |
11 |
cagagatggtgggagtggctgcatactttggtttcacaacaatattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggca |
110 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| ||| ||||||||||||||||||||| ||||| |
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|
| T |
5525919 |
cagagatggtgggagtggctgcttactttggtttaacaaca---ttgtggacatgagaaaacatcctgacgtaggacaagacatttacatacgattggca |
5525823 |
T |
|
| Q |
111 |
tcttcagaacttggtattttcttttcttattgcatattttgtcttttcggttagatatatagcatagacttatatatttcaccatttgt |
199 |
Q |
| |
|
|||||||||||||||||||| ||| ||| |||||||| |||||| |||||||||||||| | | |||||||||||| ||||||| |
|
|
| T |
5525822 |
tcttcagaacttggtattttaacttcctatcacatatttttccttttcagttagatatatagc--acatttatatatttcatcatttgt |
5525736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 11 - 199
Target Start/End: Complemental strand, 5484875 - 5484690
Alignment:
| Q |
11 |
cagagatggtgggagtggctgcatactttggtttcacaacaatattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggca |
110 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||| |||||||||||| ||||| |
|
|
| T |
5484875 |
cagagatggtgggagtggctgcttactttggtttggcaaca---ttgtggacatgagaaaacatcctgacgtaggacaagaaatttacatacggctggca |
5484779 |
T |
|
| Q |
111 |
tcttcagaacttggtattttcttttcttattgcatattttgtcttttcggttagatatatagcatagacttatatatttcaccatttgt |
199 |
Q |
| |
|
||||||||||||||||||||| |||| | |||||||| ||| ||| || |||||||||||| | | |||| ||||||| ||||||| |
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|
| T |
5484778 |
tcttcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatatagcacaaatttatttatttcatcatttgt |
5484690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 5828158 - 5828355
Alignment:
| Q |
11 |
cagagatggtgggagtggctgcatactttggtttcacaacaatattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggca |
110 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | ||| |
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|
| T |
5828158 |
cagagatggtgggagtggctgcttactttggttt---aacaatattgtggacatgagaaaacatcctgacgtaggacaagacatttacatacgactcgca |
5828254 |
T |
|
| Q |
111 |
tcttcagaacttggtattttcttttcttattgcatattttgtcttttcggttagatatatagcatagacttatatat-ttcaccatttgtcttgatatta |
209 |
Q |
| |
|
||||| ||||||||||||||| |||| | |||||||| || ||| ||||||| |||| | | | |||||||| |||| ||||||||||||||||| |
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|
| T |
5828255 |
tcttccgaacttggtattttcatttccaaagacatattttacctcttcagttagatgcataggacaaatttatatatattcagcatttgtcttgatatta |
5828354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 11 - 174
Target Start/End: Original strand, 5854188 - 5854348
Alignment:
| Q |
11 |
cagagatggtgggagtggctgcatactttggtttcacaacaatattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggca |
110 |
Q |
| |
|
|||| ||| ||| ||||||||| ||||||||||| |||||| |||| || ||||||||||||| |||||||||||||||||||| ||||||| ||||| |
|
|
| T |
5854188 |
cagatatgttggaagtggctgcttactttggtttgacaaca---ttgttgatatgagaaaacatccagaccaaggacaagacattttcatacggctggca |
5854284 |
T |
|
| Q |
111 |
tcttcagaacttggtattttcttttcttattgcatattttgtcttttcggttagatatatagca |
174 |
Q |
| |
|
||||||||||||||||||| | |||| |||| ||| ||||| |||||| || ||||||||||| |
|
|
| T |
5854285 |
tcttcagaacttggtatttacatttcctattacatcttttgccttttcagtctgatatatagca |
5854348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 5848887 - 5849112
Alignment:
| Q |
11 |
cagagatggtgggagtggctgcatactttggtttcacaacaatattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggca |
110 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| ||| ||||||||||||||||||||| | ||| |
|
|
| T |
5848887 |
cagagatggtgggagtggctgcttactttggtttaacaaca---ttgtggacatgagaaaacatcctgacataggacaagacatttacatacgactcgca |
5848983 |
T |
|
| Q |
111 |
tcttcagaacttggtattttct-tttcttattgcatattttgtcttttcggttag--atatatagcatagacttatatatttcaccatttgtcttgatat |
207 |
Q |
| |
|
||||||||||| |||||||| | | || |||| ||| ||||| ||| || || || |||||||||| | |||||||||| ||||| |||| |||| |
|
|
| T |
5848984 |
tcttcagaactcggtattttttgtatcctattacatcttttgccttgtcagtgagatatatatagcacaagtgcatatatttcagcatttttcttcatat |
5849083 |
T |
|
| Q |
208 |
tattaagcattgctgaaaacttgaaatta |
236 |
Q |
| |
|
||||||||| || || ||||||||||||| |
|
|
| T |
5849084 |
tattaagcactgttgtaaacttgaaatta |
5849112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 5802494 - 5802607
Alignment:
| Q |
15 |
gatggtgggagtggctgcatactttggtttcacaacaatattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggcatctt |
114 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| ||||||||| |||||||||||||||||| |||| ||||||||||||||||||||| | ||||||| |
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|
| T |
5802494 |
gatggtggtagtggctgcttactttggttt---aacaatattatggacatgagaaaacatccagacgtaggacaagacatttacatacgactcgcatctt |
5802590 |
T |
|
| Q |
115 |
cagaacttggtattttc |
131 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
5802591 |
cagaacttggtattttc |
5802607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 54 - 237
Target Start/End: Original strand, 25809319 - 25809502
Alignment:
| Q |
54 |
attgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggcatcttcagaacttggtattttcttttcttattgcatattttgtc |
153 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| ||||||||||| |
|
|
| T |
25809319 |
attgttgacatgagaatacatcaagaccaaggacaagacatttacatacggctggcatcttcagaacttggtattttcatttgttattacatattttgtc |
25809418 |
T |
|
| Q |
154 |
ttttcggttagatatatagcatagacttatatatttcaccatttgtcttgatattattaagcattgctgaaaacttgaaattac |
237 |
Q |
| |
|
|||| ||||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
25809419 |
ctttcagttagatatatagcataaatttacatatttcaccatttgtgttgatattattaagcatccttgaaaacttgaaattac |
25809502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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