View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12919_low_3 (Length: 328)
Name: NF12919_low_3
Description: NF12919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12919_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 314
Target Start/End: Complemental strand, 43802428 - 43802131
Alignment:
| Q |
17 |
caagtggtcccggagggtataatcttaaggtctccatgatcacaatatccaagtaacttaactttgacaaatcattttcttctactaatttcttcgcccc |
116 |
Q |
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| T |
43802428 |
caagtggtcccggagggtataatcttaaggtctccatgatcacaatatccaagtaacttaactttgacaaatcattttcttctactaatttgttcgcccc |
43802329 |
T |
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| Q |
117 |
aaccacgttatctagctcttgttggagatttttcatcactcttggatgcctcatgagctctgataaagcccactccacaagtgttgcggaagtttcaaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43802328 |
aaccacgttatctagctcttgttggagatttttcatcactcttggatgcctcatgagctctgataaagcccactccacaaccgttgcggaagtttcaaat |
43802229 |
T |
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| Q |
217 |
gccccggcaatcatgtctagggatatagcctttatgtttgttcgatcaacgacatgggttttttcgtcagagagatcgatcggttggtgcatcagtga |
314 |
Q |
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| T |
43802228 |
gccccggcaatcatgtctagggatatagcctttatgtttgttcgatcaacgacatgggttttttcgtcagagggatcgatcggttggtgcatcagtga |
43802131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 17 - 314
Target Start/End: Complemental strand, 43812997 - 43812700
Alignment:
| Q |
17 |
caagtggtcccggagggtataatcttaaggtctccatgatcacaatatccaagtaacttaactttgacaaatcattttcttctactaatttcttcgcccc |
116 |
Q |
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|||||||||| | ||| |||||||||||||||||||||||||||||||| |||||||||||||||| || |||||| || || |||||||| ||| ||| |
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| T |
43812997 |
caagtggtcctgcaggatataatcttaaggtctccatgatcacaatatctaagtaacttaactttgccatatcattctcctccactaatttgttcatccc |
43812898 |
T |
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| Q |
117 |
aaccacgttatctagctcttgttggagatttttcatcactcttggatgcctcatgagctctgataaagcccactccacaagtgttgcggaagtttcaaat |
216 |
Q |
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||| || |||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |||||| |
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| T |
43812897 |
aactacactatccagctcttgttggagatttttcattactcttggatgcctcatgagctcggataaagcccactccacaatggttgcagaagtgtcaaat |
43812798 |
T |
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| Q |
217 |
gccccggcaatcatgtctagggatatagcctttatgtttgttcgatcaacgacatgggttttttcgtcagagagatcgatcggttggtgcatcagtga |
314 |
Q |
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||| |||| |||||||||| || |||||||||||||||||||||||||| ||||||| ||| |||||||||| |||| |||| |||||| ||||||| |
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| T |
43812797 |
gccgcggcgatcatgtctaaggctatagcctttatgtttgttcgatcaatgacatggctttgttcgtcagagggatcaatcgtctggtgcgtcagtga |
43812700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 29944776 - 29944727
Alignment:
| Q |
142 |
agatttttcatcactcttggatgcctcatgagctctgataaagcccactc |
191 |
Q |
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|||||||||||||||||||||||||| | || || |||||||||||||| |
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| T |
29944776 |
agatttttcatcactcttggatgccttaaaagttcggataaagcccactc |
29944727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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