View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12919_low_6 (Length: 300)
Name: NF12919_low_6
Description: NF12919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12919_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 44112864 - 44112594
Alignment:
| Q |
19 |
aagatacaagagttgcctccacagggcattagtgaacagatacagagaaagaaggtcactggttttctttgtgtgtccaagagaagacaaagtggtgaga |
118 |
Q |
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| T |
44112864 |
aagatacaagagttgcctccacagggcattagtgaacagatacagagaaagaaggtcactggttttctttgtgtgtccaagagaagacaaagtggtgaga |
44112765 |
T |
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| Q |
119 |
cccccagaaaatttgttaagcaaaaatgaggcaagaaagtaccctgattttacatggtcaagtttgtttgaatttacacaaaaacactacagagctgatg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44112764 |
cccccagaaaatttgttaagcaaaaatgaggcaagaaagtaccctgattttacatggtcaagtttgtttgaatttacacaaaaacactacagagctgatg |
44112665 |
T |
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| Q |
219 |
ttgctacgctccaaagcttctttcagtggcattcctcttgcaacttat-attaatcatatgatatgatgat |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44112664 |
ttgctacgctccaaagcttctttcagtggcattcctcttgcaacttataattaatcatatgatatgatgat |
44112594 |
T |
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