View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12919_low_7 (Length: 285)
Name: NF12919_low_7
Description: NF12919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12919_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 12 - 269
Target Start/End: Original strand, 51919379 - 51919636
Alignment:
| Q |
12 |
tattctagaagccgcattttacaaaatgatcgagcataagaaatcattcttgagaatcaagatatttttatactatttgtgtttgacatgttttgtttca |
111 |
Q |
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| T |
51919379 |
tattctagaagccgcattttacaaaatgatcgagcataagaaatcattcttgagaatcaagatatttttatactatttgtggttgacatattttgtttca |
51919478 |
T |
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| Q |
112 |
tagaataaaatgttgttgacgttctatgaagggttcaaatggtgatgcatattaatgttgtgtttcgtagatttatggatgttgtgtttaagagaactag |
211 |
Q |
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| T |
51919479 |
tagaataaaatgttgttgacgttctgcgaagggttcaaatggtgatgcacattaacgttgtgtttcctagatttatggatgttgtgtttaagagaactag |
51919578 |
T |
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| Q |
212 |
tttggttatctgaaaaggattaacatcgcatcttgttatttgtttatcttccttttat |
269 |
Q |
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| T |
51919579 |
tttggttatctgaaaagggttagcatcgcatcttgttacttgtttatcttccttttat |
51919636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 34536964 - 34536996
Alignment:
| Q |
66 |
aatcaagatatttttatactatttgtgtttgac |
98 |
Q |
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| T |
34536964 |
aatcaacatatttttatactatttgtgtttgac |
34536996 |
T |
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