View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12919_low_8 (Length: 272)
Name: NF12919_low_8
Description: NF12919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12919_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 7 - 164
Target Start/End: Original strand, 14490415 - 14490572
Alignment:
| Q |
7 |
ggagcagagatcggtgtgctttgaattagagttgttctactaggagagaaaacatcgaaggtaagggcactttcccatacttatcatattaaactaatgg |
106 |
Q |
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| T |
14490415 |
ggagcaaagatcggtgtgctttgaattagagttgttctactaggagagaaaacatcaaaggtaagggcacttctccatacttatcatattaaactaatgg |
14490514 |
T |
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| Q |
107 |
ttagatattgtatagtagaaagtatgattcataaccgtttaaagaggaaagaaattga |
164 |
Q |
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| T |
14490515 |
ttagatattgtagagtagaaagtatgattcataaccgtttaaagaggaaagaaattga |
14490572 |
T |
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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 255
Target Start/End: Original strand, 14490637 - 14490670
Alignment:
| Q |
222 |
gatgttggtgtatgataccttggtgccccaaaat |
255 |
Q |
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| T |
14490637 |
gatgttggtgtatgataccttggtgccccaaaat |
14490670 |
T |
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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 43656365 - 43656462
Alignment:
| Q |
65 |
aggtaagggcactttcccatacttatcatattaaactaatggttagatattgtatagtagaaagtatgattcataaccgtttaaagaggaaagaaatt |
162 |
Q |
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| T |
43656365 |
aggtaagggcacttccccatacttaacatattaaactaatggttatatattatagagtagaaagtatgatccataaccgtttaaagagaaaagaaatt |
43656462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 64 - 159
Target Start/End: Original strand, 25673133 - 25673228
Alignment:
| Q |
64 |
aaggtaagggcactttcccatacttatcatattaaactaatggttagatattgtatagtagaaagtatgattcataaccgtttaaagaggaaagaa |
159 |
Q |
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| T |
25673133 |
aaggtaagggcacttcctcatacttatcatattagactaatggttagatattatagagtagaaagtatgattcataaccgtttaaaaagaaaagaa |
25673228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 34161239 - 34161142
Alignment:
| Q |
65 |
aggtaagggcactttcccatacttatcatattaaactaatggttagatattgtatagtagaaagtatgattcataaccgtttaaagaggaaagaaatt |
162 |
Q |
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| T |
34161239 |
aggtaagggtatttccccatactaatcatattagactaatggttaggtattataaagtagaaattgtgattcataatcgtttaaagagagaagaaatt |
34161142 |
T |
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