View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12919_low_9 (Length: 269)
Name: NF12919_low_9
Description: NF12919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12919_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 2382365 - 2382603
Alignment:
| Q |
10 |
gcacagacgatcaaatctgcccttgaaaaggctggtcttcctgtatctaatattgattggtaacttctacatcaggtacaaagaaattcataaaactaaa |
109 |
Q |
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| T |
2382365 |
gcacagacgatcaaatctgcccttgaaaaggctggtcttcctgtatctagtattgattggttacttctacatcaggtacaaagaaattcataaaactaaa |
2382464 |
T |
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| Q |
110 |
ctcaagcatgtgatattcttttgtatacaacaattcattagctgcacttatgttgtgtatcactcttctgattggtaggataaattctagttgaaacttg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2382465 |
ctcaagcatgtgatattcttttgtatacaacaattcattagctgcacttatgttgtgtatcactcttctgattggtaggataaattctagttgaaacttg |
2382564 |
T |
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| Q |
210 |
aaagtgaaaacaaaatgtcatttgagttaacttgggaat |
248 |
Q |
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| T |
2382565 |
aaagtgaaaacaaaatgtcatttgagttaacttgggaat |
2382603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 45320427 - 45320197
Alignment:
| Q |
11 |
cacagacgatcaaatctgcccttgaaaaggctggtcttcctgtatctaatattgattggtaacttctacatcaggtacaaagaaattcataaaactaaac |
110 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45320427 |
cacagacgatcgaatctgcccttgaaaaggctggtcttcctgtatctagtattgattggttacttctacatcaggtacaaagaaattcataaaactaaac |
45320328 |
T |
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| Q |
111 |
tcaagcatgtgatattcttttgtatacaacaattcattagctgcacttatgttgtgtatcactcttctgattggtaggataaattctagttgaaacttga |
210 |
Q |
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||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| || |
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| T |
45320327 |
tcagacatgtgatattcttttgtatgcaacaattcattagctgcacttatgttgcgtatcacttttctgattggtaggataaattctagtt-------ga |
45320235 |
T |
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| Q |
211 |
aagtgaaaacaaaatgtcatttgagttaacttgggaat |
248 |
Q |
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||||||||||||||||| ||||||||||||||||||| |
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| T |
45320234 |
aagtgaaaacaaaatgtattttgagttaacttgggaat |
45320197 |
T |
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