View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1291_high_10 (Length: 591)
Name: NF1291_high_10
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1291_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 13 - 560
Target Start/End: Complemental strand, 39560285 - 39559735
Alignment:
| Q |
13 |
aatatcaaaagaaaggttatggaaacgatctaccgccgannnnnnnaatcaagtttaaagataacatgcagaaatgttggatgcgctcttatacaacata |
112 |
Q |
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| T |
39560285 |
aatatcaaaagaaaggttatgaaaacgatctaccgccgatttttttaatcaagtttaaagataacatgcagaaatgttggatgcgctcttatacaacata |
39560186 |
T |
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| Q |
113 |
cataaattgacctatatattttactatcattatatagttgcagtgatgtcaaatactttctttgatgttggaatctgcttaaagctagcctggaattttg |
212 |
Q |
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| T |
39560185 |
cataaattgacctatatattttactatcattatatagttgcagtgatgtcaaatactttccttgatgttggaatctacttaaagctagcctggaattttg |
39560086 |
T |
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| Q |
213 |
ttactaacccaaacaagctttggtttaggctgatgaaagttaaatatgtctgtggtcctaatgttttccctgatgtttggatgaagaaaaaatgttcaaa |
312 |
Q |
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| T |
39560085 |
ttactaacccaaacaagctttggtttaggctgatgaaagttaaatatgtctgtggtcctaatgttttccttgatgtttgcatgaagaaaaaatgttcaaa |
39559986 |
T |
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| Q |
313 |
catttgatgagctat---ttgtaatgtttgggaagatgcaacaattaatctatcttggtccattcaaaatgggaaagataccaggttctagaaggataag |
409 |
Q |
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| T |
39559985 |
catttgatgagctattacttgtaatgtttgggaagatgcaacaattaatctatcttggtccattcaaaatgggaaagataccaggttctagaaggataaa |
39559886 |
T |
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| Q |
410 |
ttgattcatgttgctgctccttttgcaagcaatttcgctaataatattccgattggttaggtgaatttccctgtgtggaactaggagatctttaaccaat |
509 |
Q |
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| T |
39559885 |
ttgattcatgttgctgctccttttgcaagcaatttcgctaataatattccgattggttagatgaatttccctgtgtggaactaggagatctttaaccaat |
39559786 |
T |
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| Q |
510 |
tgttgcctaaagatgtcagcaatgcaatctctgctatcaaacctccatcaa |
560 |
Q |
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| T |
39559785 |
tgttgcctaaagatgtcagcactgcaatctctgctatcaaacctccatcaa |
39559735 |
T |
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