View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1291_high_11 (Length: 566)
Name: NF1291_high_11
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1291_high_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 108 - 561
Target Start/End: Complemental strand, 45169771 - 45169335
Alignment:
| Q |
108 |
tgaaagagaaaatttatccctataaatggaacggttccttcctgctgctacacgataaaccaactgcaaatgattggggtccatcgagggagagatgata |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45169771 |
tgaaagagaaaatttatccctataaatggaacggttccttcctgctgctacaccataaaccaactgcaaatgattggggtccatcgagggagagatgata |
45169672 |
T |
|
| Q |
208 |
ctctcttacttatcctatacccgtactacaatctattatatatctccaattaacaaacttttgcttatattaaaaacaaagtnnnnnnngacaagccatg |
307 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45169671 |
ctctct---------------------acaatctattatatatctctaattaacaaccttttgcttatattaaaaacaaagtaaaaaaagacaagccatg |
45169593 |
T |
|
| Q |
308 |
gggtgaattattgtgtacaaataa-----cctttcacggatcaatttgtttagcttacagaagaacttaataatgaattttgccagtgtagcgtattaac |
402 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45169592 |
gggtgaattattgtgtacaaataaaataacctttcacggatcaatttgtttagcttacagaagaacttaataatgaattttgccagtgtagcgtattaac |
45169493 |
T |
|
| Q |
403 |
agtaagaattcataatatgcatttgcacacggattgaaaaagacatattgacagtcaactgggataagccatggcattcatgcatggaccatggcttatg |
502 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45169492 |
agtaagaattcataatat-catttgcacacggattgaaaaagacatattgacagtcaactgggataagccatggcattcatgcatggaccatggcttatg |
45169394 |
T |
|
| Q |
503 |
ttttcttcttccacaaactttgaattatacaactgcatggttggagctttcatctcact |
561 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45169393 |
ttttcttcttccacaaactttgaattatacaactgcatggttggagctttcatctcact |
45169335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 45172838 - 45172802
Alignment:
| Q |
30 |
gagcagtcttatggttcctcataatctgcatatggtc |
66 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45172838 |
gagcagtcttatggttcctcataatctgcatatggtc |
45172802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 13218132 - 13218165
Alignment:
| Q |
33 |
cagtcttatggttcctcataatctgcatatggtc |
66 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
13218132 |
cagtcttatggttcctcattatctgcatatggtc |
13218165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 54181002 - 54180969
Alignment:
| Q |
33 |
cagtcttatggttcctcataatctgcatatggtc |
66 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
54181002 |
cagtcttatggttcctcattatctgcatatggtc |
54180969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University