View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1291_high_14 (Length: 476)

Name: NF1291_high_14
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1291_high_14
NF1291_high_14
[»] chr6 (3 HSPs)
chr6 (30-468)||(26380691-26381130)
chr6 (249-302)||(12194527-12194580)
chr6 (254-332)||(31415953-31416030)
[»] chr5 (3 HSPs)
chr5 (51-468)||(21041252-21041672)
chr5 (270-329)||(18750063-18750122)
chr5 (125-226)||(18750171-18750272)
[»] chr8 (3 HSPs)
chr8 (264-321)||(22840424-22840481)
chr8 (270-320)||(27022215-27022265)
chr8 (295-332)||(36968337-36968374)
[»] chr4 (3 HSPs)
chr4 (272-329)||(33765082-33765139)
chr4 (258-313)||(23350160-23350215)
chr4 (128-226)||(43928933-43929030)
[»] chr2 (1 HSPs)
chr2 (270-335)||(16379157-16379222)
[»] chr1 (1 HSPs)
chr1 (151-216)||(30872935-30873000)
[»] scaffold0040 (1 HSPs)
scaffold0040 (270-332)||(2074-2136)
[»] scaffold1519 (1 HSPs)
scaffold1519 (260-313)||(1584-1637)
[»] scaffold0022 (1 HSPs)
scaffold0022 (253-302)||(69709-69758)


Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 30 - 468
Target Start/End: Original strand, 26380691 - 26381130
Alignment:
Q  30 aaaatgatacatcgatgaatcaaattcacatcagaatgagagagatcatgagagctgcgtaagtatgaaattgcatatttgaatgaagatttacaaacaa 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26380691 aaaatgatacatcgatgaatcaaattcacatcagaatgagagagatcatgagagttgcgtaagtatgaaattgcatatttgaatgaagatttacaaacaa 26380790  T
Q  130 ttgtttggtattaactacacaaacaagatgcatcgtctttttggtaatatatactataagatctccataattaaacatgcttgacttagagcaatttgag 229  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26380791 ttgtttggtattaactacacaaacaagatgcatcgtctttttgctaatatatactataagatctccatagttaaacatgcttgacttagagcaatttgag 26380890  T
Q  230 atgaataatatttt-gattgtccagaaaacgtgtgagttatgacaaaacacactaaaaagactcgagttggtttatgtggtcagttgacaatacttaaag 328  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26380891 atgaataatattttggattgtccagaaaacgtgtgagttaggacaaaacacactaaaaagactcgagttggtttatgtggtcagttgacaatacttaaag 26380990  T
Q  329 ttgtttgaggcgttacagtcggtagcttcgaacctcaaagtgtgcttctctacaggttttcgaatccctctaatattaacaattattgtcttagattaat 428  Q
    | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||  ||||    
T  26380991 tcgttttaggcgttacagtcggtagcttcgaacctcaaagtgtgcttctctacaggttttcgaatccctctggtactaacaattattgtcttaggctaat 26381090  T
Q  429 ctatacagaattttgatctaacttcaattgaacctatgat 468  Q
    ||||||| ||||||||||||||||||||||| ||||||||    
T  26381091 ctatacaaaattttgatctaacttcaattgatcctatgat 26381130  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 249 - 302
Target Start/End: Original strand, 12194527 - 12194580
Alignment:
Q  249 tccagaaaacgtgtgagttatgacaaaacacactaaaaagactcgagttggttt 302  Q
    |||||||||||||||||||  ||||||||||||| |||||||||  ||||||||    
T  12194527 tccagaaaacgtgtgagtttggacaaaacacactgaaaagactcatgttggttt 12194580  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 332
Target Start/End: Complemental strand, 31416030 - 31415953
Alignment:
Q  254 aaaacgtgtgagttatgacaaaacacactaaaaagactcgagttggtttatgtggtcagttgacaatacttaaagttgt 332  Q
    ||||||||||||| | |||||||||| || |||||| ||| |||||||| || | ||||| | ||||||||||||||||    
T  31416030 aaaacgtgtgagtgaggacaaaacacgctgaaaaga-tcgtgttggtttgtgggatcagtcggcaatacttaaagttgt 31415953  T

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Target: chr5 (Bit Score: 108; Significance: 5e-54; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 51 - 468
Target Start/End: Complemental strand, 21041672 - 21041252
Alignment:
Q  51 aaattcacatcagaatgagagagatcatgagagctgcgtaagtatgaaattgcatatttgaatgaagatttacaaacaattgtttggtattaactacaca 150  Q
    ||||||||||| |||||||||| || || || | || |||||||||| ||| ||| |||||||||| ||||| ||  |||| ||| |||||| |||||||    
T  21041672 aaattcacatcggaatgagagatattatcag-gttgtgtaagtatgagattacatgtttgaatgaaaatttataag-aattatttagtattatctacaca 21041575  T
Q  151 aacaagatgcatcgtctttttggtaatatatactataagatctccataattaaacatgcttgacttagagcaatttgagatgaataatattttg---att 247  Q
    ||||||||||||||||||||||||||| |||||||||| | || | ||  ||| | ||||||||||||| ||||||| |||||||  | ||| |   |||    
T  21041574 aacaagatgcatcgtctttttggtaatctatactataaaaacttcttaggtaagcgtgcttgacttagatcaatttgggatgaatgct-tttggaaaatt 21041476  T
Q  248 gtccagaaaacgtgtgagttatgacaaaacacactaaaaagactcgagttggtttatgtggtcagttgacaatacttaaagttgtttgaggcgttacagt 347  Q
    || ||||||  |||||||||| |||||||||  || ||||||||||||||||| | ||||||||||||||| |||||||||| |||||||  ||||||||    
T  21041475 gttcagaaagtgtgtgagttaggacaaaacatgctgaaaagactcgagttggtgtgtgtggtcagttgacattacttaaagtcgtttgagaagttacagt 21041376  T
Q  348 cggt---agcttcgaacctcaaagtgtgcttctctacaggttttcgaatccctctaatattaacaattattgtcttagattaatctatacagaattttga 444  Q
    | ||   || || |||||||||| |||||| ||||| ||||||  ||||||||||  |  |||||| | |||||||||   |||| ||| |   |||||     
T  21041375 cagtgtaagttttgaacctcaaaatgtgctactctataggtttctgaatccctctggtgctaacaaatcttgtcttaggccaatccatataaggttttgc 21041276  T
Q  445 tctaacttcaattgaacctatgat 468  Q
    ||||||||||||||||||| ||||    
T  21041275 tctaacttcaattgaacctctgat 21041252  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 18750122 - 18750063
Alignment:
Q  270 gacaaaacacactaaaaagactcgagttggtttatgtggtcagttgacaatacttaaagt 329  Q
    ||||||||||||| ||||||||||||||||||| || |||||||  ||||||||||||||    
T  18750122 gacaaaacacactgaaaagactcgagttggtttgtggggtcagtcaacaatacttaaagt 18750063  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 18750272 - 18750171
Alignment:
Q  125 aacaattgtttggtattaactacacaaacaagatgcatcgtctttttggtaatatatactataagatctccataattaaacatgcttgacttagagcaat 224  Q
    ||||||||||||||| || ||| || || |||||||||| |||||| ||||   ||| | |||||| |||||||||||| | | |||||||| |||||||    
T  18750272 aacaattgtttggtactacctataccaaaaagatgcatcttcttttcggtagcttattccataagaactccataattaatcgtacttgacttggagcaat 18750173  T
Q  225 tt 226  Q
    ||    
T  18750172 tt 18750171  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 264 - 321
Target Start/End: Complemental strand, 22840481 - 22840424
Alignment:
Q  264 agttatgacaaaacacactaaaaagactcgagttggtttatgtggtcagttgacaata 321  Q
    ||||| ||||||||||||| |||||||||| |||||||| | |||||||| |||||||    
T  22840481 agttaggacaaaacacactgaaaagactcgtgttggtttgtatggtcagtcgacaata 22840424  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 320
Target Start/End: Complemental strand, 27022265 - 27022215
Alignment:
Q  270 gacaaaacacactaaaaagactcgagttggtttatgtggtcagttgacaat 320  Q
    |||||||||| ||||||||||||| |||||||| || ||||||| ||||||    
T  27022265 gacaaaacacgctaaaaagactcgtgttggtttgtggggtcagtcgacaat 27022215  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 36968374 - 36968337
Alignment:
Q  295 gttggtttatgtggtcagttgacaatacttaaagttgt 332  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  36968374 gttggtttgtgtggtcaattgacaatacttaaagttgt 36968337  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 272 - 329
Target Start/End: Original strand, 33765082 - 33765139
Alignment:
Q  272 caaaacacactaaaaagactcgagttggtttatgtggtcagttgacaatacttaaagt 329  Q
    |||||||||||||||||||||| |||||||| || ||||| | |||||| ||||||||    
T  33765082 caaaacacactaaaaagactcgtgttggtttgtgaggtcaatcgacaatgcttaaagt 33765139  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 313
Target Start/End: Complemental strand, 23350215 - 23350160
Alignment:
Q  258 cgtgtgagttatgacaaaacacactaaaaagactcgagttggtttatgtggtcagt 313  Q
    ||||||||| | ||||||||||||| |||||||||| |||||||| || |||||||    
T  23350215 cgtgtgagtgaggacaaaacacactgaaaagactcgtgttggtttgtggggtcagt 23350160  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 226
Target Start/End: Complemental strand, 43929030 - 43928933
Alignment:
Q  128 aattgtttggtattaactacacaaacaagatgcatcgtctttttggtaatatatactataagatctccataattaaacatgcttgacttagagcaattt 226  Q
    |||||||||||| ||  || || ||||||||||||| ||||||||||| | |||   ||||||  |||| |||||||| |||||||||| |||||||||    
T  43929030 aattgtttggtactacatataccaacaagatgcatcttctttttggtagt-tatttcataagaaatccacaattaaacgtgcttgactttgagcaattt 43928933  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 270 - 335
Target Start/End: Original strand, 16379157 - 16379222
Alignment:
Q  270 gacaaaacacactaaaaagactcgagttggtttatgtggtcagttgacaatacttaaagttgtttg 335  Q
    |||||||||| || |||||||||| |||||||| |  ||||||| |||||| ||||||||||||||    
T  16379157 gacaaaacacgctgaaaagactcgtgttggtttgtagggtcagtcgacaatgcttaaagttgtttg 16379222  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 30873000 - 30872935
Alignment:
Q  151 aacaagatgcatcgtctttttggtaatatatactataagatctccataattaaacatgcttgactt 216  Q
    ||||||||||||| ||||||||||| |  || |||||||| ||||| |||||| ||||||||||||    
T  30873000 aacaagatgcatcttctttttggtagtccattctataagaactccacaattaagcatgcttgactt 30872935  T

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Target: scaffold0040 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 332
Target Start/End: Complemental strand, 2136 - 2074
Alignment:
Q  270 gacaaaacacactaaaaagactcgagttggtttatgtggtcagttgacaatacttaaagttgt 332  Q
    ||||||||||| | |||||||||| |||||||| || ||||||| |||||| || ||||||||    
T  2136 gacaaaacacattgaaaagactcgtgttggtttgtggggtcagtcgacaatcctaaaagttgt 2074  T

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Target: scaffold1519 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 1637 - 1584
Alignment:
Q  260 tgtgagttatgacaaaacacactaaaaagactcgagttggtttatgtggtcagt 313  Q
    ||||||| | |||||||||| ||||||||||||| |||||||| || |||||||    
T  1637 tgtgagtgaggacaaaacacgctaaaaagactcgtgttggtttgtggggtcagt 1584  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 302
Target Start/End: Complemental strand, 69758 - 69709
Alignment:
Q  253 gaaaacgtgtgagttatgacaaaacacactaaaaagactcgagttggttt 302  Q
    |||| ||||||||| |||||||| ||| ||||||||||||| ||||||||    
T  69758 gaaagcgtgtgagtgatgacaaaccacgctaaaaagactcgtgttggttt 69709  T

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