View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1291_high_17 (Length: 448)

Name: NF1291_high_17
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1291_high_17
NF1291_high_17
[»] chr1 (3 HSPs)
chr1 (136-274)||(47907395-47907533)
chr1 (30-111)||(47907295-47907376)
chr1 (290-351)||(47907565-47907626)


Alignment Details
Target: chr1 (Bit Score: 118; Significance: 5e-60; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 136 - 274
Target Start/End: Original strand, 47907395 - 47907533
Alignment:
Q  136 gtatactaaccatgaaatattatttgcaatgaaacgaattagttttccttggttaagnnnnnnngaagagaaaattaacccttatggcaccaaaaacata 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  47907395 gtatactaaccatgaaatattatttgcaatgaaacgaattagttttccttggttaagaaaaaaagaagagaaaattaacccttatggcaccaaaaacata 47907494  T
Q  236 tatgtatttattgattaataagtacacatgttttattca 274  Q
    |||||||||||||||||||||||||||||||||||||||    
T  47907495 tatgtatttattgattaataagtacacatgttttattca 47907533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 47907295 - 47907376
Alignment:
Q  30 ggaagtgtttcggtgttttggagacaaggtttggataaggtcatattcaaaatgtattgtaaatagcattgtatttaaagtt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47907295 ggaagtgtttcggtgttttggagacaaggtttggataaggtcatattcaaaatgtattgtaaatagcattgtatttaaagtt 47907376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 290 - 351
Target Start/End: Original strand, 47907565 - 47907626
Alignment:
Q  290 agtttatgatcaacaagaaggggattgactagaatggaagggttgaggtcttgaggtctgtg 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47907565 agtttatgatcaacaagaaggggattgactagaatggaagggttgaggtcttgaggtctgtg 47907626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University