View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1291_high_18 (Length: 426)

Name: NF1291_high_18
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1291_high_18
NF1291_high_18
[»] chr7 (1 HSPs)
chr7 (61-390)||(41593941-41594270)
[»] chr8 (1 HSPs)
chr8 (61-390)||(12869508-12869837)
[»] chr2 (1 HSPs)
chr2 (61-390)||(43522545-43522874)
[»] chr5 (4 HSPs)
chr5 (61-390)||(14006810-14007128)
chr5 (276-390)||(23123671-23123785)
chr5 (61-182)||(23123876-23123989)
chr5 (150-234)||(23123753-23123836)
[»] chr3 (3 HSPs)
chr3 (150-390)||(22512193-22512411)
chr3 (61-182)||(22512451-22512564)
chr3 (312-368)||(39702798-39702855)
[»] chr1 (1 HSPs)
chr1 (312-379)||(48725115-48725183)
[»] chr4 (2 HSPs)
chr4 (312-368)||(42883957-42884014)
chr4 (73-117)||(32103271-32103315)


Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 61 - 390
Target Start/End: Original strand, 41593941 - 41594270
Alignment:
Q  61 aactgcaatgttttcatatttttgttgttatgcacatcttgaggaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagca 160  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41593941 aactgcaatgttttcatatttttgttgttatgcacatcttgagcaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagca 41594040  T
Q  161 atgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtatcaatgtttttctatggtagtagcaacattttg 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41594041 atgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtagcaatgtttttctatggtagtagcaacattttg 41594140  T
Q  261 ttcacattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttcaattaaacttt 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41594141 ttcacattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttcaattaaacttt 41594240  T
Q  361 tgaagcataagtgattttgacttatagaat 390  Q
    ||||||||||||||||||||||||||||||    
T  41594241 tgaagcataagtgattttgacttatagaat 41594270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 61 - 390
Target Start/End: Complemental strand, 12869837 - 12869508
Alignment:
Q  61 aactgcaatgttttcatatttttgttgttatgcacatcttgaggaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagca 160  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12869837 aacttcaatgttttcatatttttgttgttatgcacatcttgagcaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagca 12869738  T
Q  161 atgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtatcaatgtttttctatggtagtagcaacattttg 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12869737 atgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtagcaatgtttttctatggtagtagcaacattttg 12869638  T
Q  261 ttcacattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttcaattaaacttt 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12869637 ttcacattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttcaattaaacttt 12869538  T
Q  361 tgaagcataagtgattttgacttatagaat 390  Q
    ||||||||||||||||||||||||||||||    
T  12869537 tgaagcataagtgattttgacttatagaat 12869508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 61 - 390
Target Start/End: Original strand, 43522545 - 43522874
Alignment:
Q  61 aactgcaatgttttcatatttttgttgttatgcacatcttgaggaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagca 160  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43522545 aactgcaatgttttcatatttttgttgttatgcacatcttgagcaaccttgcatttgttatgtgattctcttctcttgctatggcagattggcagtagca 43522644  T
Q  161 atgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtatcaatgtttttctatggtagtagcaacattttg 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43522645 atgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtagcaatgtttttctatggtagtagcaacattttg 43522744  T
Q  261 ttcacattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttcaattaaacttt 360  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43522745 ttcacattttgttcataaatgaatgtttttctatggcagtggcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttcaattaaacttt 43522844  T
Q  361 tgaagcataagtgattttgacttatagaat 390  Q
    ||||||||||||||||||||||||||||||    
T  43522845 tgaagcataagtgattttgacttatagaat 43522874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 280; Significance: 1e-156; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 61 - 390
Target Start/End: Original strand, 14006810 - 14007128
Alignment:
Q  61 aactgcaatgttttcatatttttgttgttatgcacatcttgaggaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagca 160  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14006810 aactgcaatgttttcatatttttgttgttatgcacatcttgagcaaccttgcatttgttatgtgattctcatctcttgttatggcagattggcagtagca 14006909  T
Q  161 atgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtatcaatgtttttctatggtagtagcaacattttg 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||            
T  14006910 atgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtagcaatgtttttctatggtagtagca-------- 14007001  T
Q  261 ttcacattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttcaattaaacttt 360  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14007002 ---acattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttcaattaaacttt 14007098  T
Q  361 tgaagcataagtgattttgacttatagaat 390  Q
    ||||||||||||||||||||||||||||||    
T  14007099 tgaagcataagtgattttgacttatagaat 14007128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 276 - 390
Target Start/End: Complemental strand, 23123785 - 23123671
Alignment:
Q  276 taaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttcaattaaacttttgaagcataagtgat 375  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23123785 taaatgaatgtttttatatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgtttccaattaaacttttgaagcataagtgat 23123686  T
Q  376 tttgacttatagaat 390  Q
    |||||||||||||||    
T  23123685 tttgacttatagaat 23123671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 61 - 182
Target Start/End: Complemental strand, 23123989 - 23123876
Alignment:
Q  61 aactgcaatgttttcatatttttgttgttatgcacatcttgaggaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagca 160  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||        |||||||||    
T  23123989 aactacaatgttttcatatttttgttgttatgcacatcttgagcaaccttgcaattgttatgtgattctctgctcttgttatg--------gcagtagca 23123898  T
Q  161 atgttatcacggcccacccaca 182  Q
    ||||||||||||||||||||||    
T  23123897 atgttatcacggcccacccaca 23123876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 23123836 - 23123753
Alignment:
Q  150 tggcagtagcaatgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtatcaatgt 234  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||  |  ||||||||| |||||||||| ||||||    
T  23123836 tggcagtagcaatgttatcacggctcacccacattttgttcatattattggta-aatgaatgtttttatatggcagtagcaatgt 23123753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 154; Significance: 2e-81; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 150 - 390
Target Start/End: Complemental strand, 22512411 - 22512193
Alignment:
Q  150 tggcagtagcaatgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtatcaatgtttttctatggtagta 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||                      |||||    
T  22512411 tggcagtagcaatgttatcacggcccacccacattttgttcatattattggtagcggcaatgtttttctatgg----------------------tagta 22512334  T
Q  250 gcaacattttgttcacattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttc 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  22512333 gcaacattttgttcacattttgttcataaatgaatgtttttctatggcagtcgcaatgtgccaatgtgttatttgcaatgaatatgttctaattgtttcc 22512234  T
Q  350 aattaaacttttgaagcataagtgattttgacttatagaat 390  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22512233 aattaaacttttgaagcataagtgattttgacttatagaat 22512193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 61 - 182
Target Start/End: Complemental strand, 22512564 - 22512451
Alignment:
Q  61 aactgcaatgttttcatatttttgttgttatgcacatcttgaggaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagca 160  Q
    ||||| ||| ||||||  ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||        || ||||||||    
T  22512564 aactggaatattttcagttttttgtagttatgcacatcttgagcaaccttgcatttgttatgtgattctcttatcttgtta--------tgacagtagca 22512473  T
Q  161 atgttatcacggcccacccaca 182  Q
    |||||||||||| |||||||||    
T  22512472 atgttatcacgggccacccaca 22512451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 368
Target Start/End: Original strand, 39702798 - 39702855
Alignment:
Q  312 aatgtgtt-atttgcaatgaatatgttctaattgttttcaattaaacttttgaagcat 368  Q
    |||||||| ||||||||||||||||||||||| |||| || |||||||||||||||||    
T  39702798 aatgtgttcatttgcaatgaatatgttctaatcgtttccagttaaacttttgaagcat 39702855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 312 - 379
Target Start/End: Complemental strand, 48725183 - 48725115
Alignment:
Q  312 aatgtgtt-atttgcaatgaatatgttctaattgttttcaattaaacttttgaagcataagtgattttg 379  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  48725183 aatgtgttcatttgcaatgaatatgttctaattgtttccaattaaacttttgaagcatcagtgattttg 48725115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 368
Target Start/End: Complemental strand, 42884014 - 42883957
Alignment:
Q  312 aatgtgtt-atttgcaatgaatatgttctaattgttttcaattaaacttttgaagcat 368  Q
    |||||||| |||| ||||||||||||||||||||||| || |||||||||||||||||    
T  42884014 aatgtgttcattttcaatgaatatgttctaattgtttccagttaaacttttgaagcat 42883957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 32103315 - 32103271
Alignment:
Q  73 ttcatatttttgttgttatgcacatcttgaggaaccttgcatttg 117  Q
    ||||||||||||||||||||||||||||||| |||| | ||||||    
T  32103315 ttcatatttttgttgttatgcacatcttgagcaaccgttcatttg 32103271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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