View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1291_high_23 (Length: 360)

Name: NF1291_high_23
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1291_high_23
NF1291_high_23
[»] chr4 (6 HSPs)
chr4 (45-209)||(55203337-55203500)
chr4 (210-349)||(55203569-55203708)
chr4 (87-158)||(55205844-55205915)
chr4 (55-111)||(10032286-10032342)
chr4 (55-105)||(1856676-1856726)
chr4 (231-283)||(15995475-15995527)
[»] chr2 (3 HSPs)
chr2 (215-337)||(10257972-10258096)
chr2 (210-297)||(33669249-33669338)
chr2 (55-111)||(18259213-18259270)
[»] chr1 (7 HSPs)
chr1 (239-317)||(48990561-48990641)
chr1 (220-317)||(19874187-19874285)
chr1 (249-317)||(25491655-25491725)
chr1 (59-108)||(48990904-48990953)
chr1 (63-108)||(25491998-25492043)
chr1 (59-108)||(48986045-48986094)
chr1 (55-108)||(52433030-52433083)
[»] chr7 (4 HSPs)
chr7 (249-317)||(46168977-46169047)
chr7 (59-108)||(46164460-46164509)
chr7 (84-157)||(46513512-46513583)
chr7 (59-108)||(46169318-46169367)
[»] chr3 (2 HSPs)
chr3 (78-113)||(34374786-34374821)
chr3 (55-113)||(34374007-34374065)
[»] scaffold0060 (1 HSPs)
scaffold0060 (55-108)||(11167-11221)
[»] chr6 (1 HSPs)
chr6 (55-111)||(6356377-6356433)


Alignment Details
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 45 - 209
Target Start/End: Original strand, 55203337 - 55203500
Alignment:
Q  45 attcgtttattgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaacatcagcnnnnnnnaattaaaaaacaaaatagagga 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  55203337 attcgtttattgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaacatcagctttttt-aattaaaaaacaaaatagagga 55203435  T
Q  145 gaaacacgcgcttcctctttctcaagcgtatctcactcatcgccatgcctcctgccggcgccgcc 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55203436 gaaacacgcgcttcctctttctcaagcgtatctcactcatcgccatgcctcctgccggcgccgcc 55203500  T

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Target: chr4; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 210 - 349
Target Start/End: Original strand, 55203569 - 55203708
Alignment:
Q  210 cactgccgctctcacgtaccaaaccaccattgtttctcctctcttccacaccagacgattcatttacccacttttacccttgccaatttctaaatactca 309  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55203569 cactgccgctctcacgtaccaaaccaccattgtttctcttctcttccacaccagacgattcatttacccacttttacccttgccaatttctaaatactca 55203668  T
Q  310 tgacaacaactacaagactgtaaaatataattatgtctct 349  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  55203669 tgacaacaactacaagactgtaaaatataattatgtctct 55203708  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 87 - 158
Target Start/End: Complemental strand, 55205915 - 55205844
Alignment:
Q  87 ttcagattaaaaataaacaaaacatcagcnnnnnnnaattaaaaaacaaaatagaggagaaacacgcgcttc 158  Q
    ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  55205915 ttcagattaaaaataaacaaaacatcagttttttttaattaaaaaacaaaatagaggagaaacacgcgcttc 55205844  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 10032342 - 10032286
Alignment:
Q  55 tgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaacat 111  Q
    |||||||||||||  | ||| |||||||||| |||||||||||||||||||||||||    
T  10032342 tgaatgacatgtgacaaaaaaggattcaatgattcagattaaaaataaacaaaacat 10032286  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 1856726 - 1856676
Alignment:
Q  55 tgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaaca 105  Q
    |||||||||||||| | ||| ||||||||||||||||||| ||||||||||    
T  1856726 tgaatgacatgtggcaaaaaaggattcaatggttcagatttaaaataaaca 1856676  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 15995527 - 15995475
Alignment:
Q  231 aaccaccattgtttctcctctcttccacaccagacgattcatttacccacttt 283  Q
    ||||||| ||| ||||| ||||||||||||||| |  ||||||||||||||||    
T  15995527 aaccaccgttgcttctcttctcttccacaccagtcttttcatttacccacttt 15995475  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 215 - 337
Target Start/End: Original strand, 10257972 - 10258096
Alignment:
Q  215 ccgctctcacgtaccaaaccaccattgtttctcctctcttccacaccagacgattcatt--tacccacttttacccttgccaatttctaaatactcatga 312  Q
    |||| ||||| |||||||||||| ||| | ||| ||||||||| ||||  |||||||||  ||||||||||||||||||||||||||||| || |||| |    
T  10257972 ccgccctcacataccaaaccacctttgctgctcttctcttccaaaccaatcgattcattcttacccacttttacccttgccaatttctaagtattcataa 10258071  T
Q  313 caacaactacaagactgtaaaatat 337  Q
    ||||||||||||||||| |||||||    
T  10258072 caacaactacaagactgcaaaatat 10258096  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 297
Target Start/End: Complemental strand, 33669338 - 33669249
Alignment:
Q  210 cactgccgctctcacgtaccaaaccaccattgtttctcctctcttccacaccagacgattcat--ttacccacttttacccttgccaatt 297  Q
    |||||| || ||||| ||||||||| | |||||| ||| ||||||||||||| | ||||||||  |||||||||||||||||| ||||||    
T  33669338 cactgctgccctcacataccaaaccgctattgttgctcttctcttccacaccggtcgattcattcttacccacttttacccttaccaatt 33669249  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 18259270 - 18259213
Alignment:
Q  55 tgaatgacatgtggaagaaagggattcaatggttcaga-ttaaaaataaacaaaacat 111  Q
    |||||||||||||| | |||  |||||||||||||| | |||||||||||||||||||    
T  18259270 tgaatgacatgtggcaaaaaaagattcaatggttcatatttaaaaataaacaaaacat 18259213  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 239 - 317
Target Start/End: Complemental strand, 48990641 - 48990561
Alignment:
Q  239 ttgtttctcctctcttccacaccagacgattcatt--tacccacttttacccttgccaatttctaaatactcatgacaaca 317  Q
    ||||| ||| ||||||||||||||| ||||||| |  ||||||| |||||||||||||||||||||||| |||||||||||    
T  48990641 ttgttgctcttctcttccacaccagtcgattcactcttacccacatttacccttgccaatttctaaatattcatgacaaca 48990561  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 317
Target Start/End: Complemental strand, 19874285 - 19874187
Alignment:
Q  220 ctcacgtaccaaaccaccattgtttctcctctcttccacaccagacgattcatt--tacccacttttacccttgccaatttctaaatactcatgacaaca 317  Q
    ||||| ||| |||||||| ||||| ||  |||||||||||||||  |||||| |  ||||||||||||| |||||||||||||||||| |||||||||||    
T  19874285 ctcacatactaaaccacc-ttgttgctattctcttccacaccagttgattcactcttacccacttttacgcttgccaatttctaaatattcatgacaaca 19874187  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 317
Target Start/End: Complemental strand, 25491725 - 25491655
Alignment:
Q  249 tctcttccacaccagacgattcatt--tacccacttttacccttgccaatttctaaatactcatgacaaca 317  Q
    ||||||||||||||| ||||||| |  ||||||| |||||||||| ||||||||||||| |||||||||||    
T  25491725 tctcttccacaccagtcgattcactcttacccacatttacccttgtcaatttctaaatattcatgacaaca 25491655  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 48990953 - 48990904
Alignment:
Q  59 tgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaa 108  Q
    |||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  48990953 tgacatgtggcaaaaatggattcaatggttcagattaaaaataaacaaaa 48990904  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 25492043 - 25491998
Alignment:
Q  63 atgtggaagaaagggattcaatggttcagattaaaaataaacaaaa 108  Q
    |||||| | ||| |||||||||||||||||||||||||||||||||    
T  25492043 atgtggcaaaaatggattcaatggttcagattaaaaataaacaaaa 25491998  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 48986045 - 48986094
Alignment:
Q  59 tgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaa 108  Q
    |||||||||| | ||| |||||||||| ||||||||||||||||||||||    
T  48986045 tgacatgtggcaaaaatggattcaatgattcagattaaaaataaacaaaa 48986094  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 52433030 - 52433083
Alignment:
Q  55 tgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaa 108  Q
    ||||||||| |||| | ||| | |||||||||||||||||||||||||||||||    
T  52433030 tgaatgacacgtggcacaaatgaattcaatggttcagattaaaaataaacaaaa 52433083  T

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Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 249 - 317
Target Start/End: Complemental strand, 46169047 - 46168977
Alignment:
Q  249 tctcttccacaccagacgattcatt--tacccacttttacccttgccaatttctaaatactcatgacaaca 317  Q
    ||||||||||||||| ||||||| |  ||||||| |||||||||||||||||||||||| |||||||||||    
T  46169047 tctcttccacaccagtcgattcactcttacccacatttacccttgccaatttctaaatattcatgacaaca 46168977  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 46164460 - 46164509
Alignment:
Q  59 tgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaa 108  Q
    |||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  46164460 tgacatgtggcaaaaatggattcaatggttcagattaaaaataaacaaaa 46164509  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 46513583 - 46513512
Alignment:
Q  84 tggttcagattaaaaataaacaaaacatcagcnnnnnnnaattaaaaaacaaaatagaggagaaacacgcgctt 157  Q
    ||||||||||||||||||||||||||||||||       |||||||||| |||||||||||| |||||||||||    
T  46513583 tggttcagattaaaaataaacaaaacatcagc-ttttttaattaaaaaaaaaaatagaggag-aacacgcgctt 46513512  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 46169367 - 46169318
Alignment:
Q  59 tgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaa 108  Q
    |||||||||| | ||| |||||||||| ||||||||||||||||||||||    
T  46169367 tgacatgtggcaaaaatggattcaatgattcagattaaaaataaacaaaa 46169318  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 113
Target Start/End: Complemental strand, 34374821 - 34374786
Alignment:
Q  78 attcaatggttcagattaaaaataaacaaaacatca 113  Q
    ||||||||||||||||||||||||||||||||||||    
T  34374821 attcaatggttcagattaaaaataaacaaaacatca 34374786  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 34374007 - 34374065
Alignment:
Q  55 tgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaacatca 113  Q
    |||||||||||||| | |||  |||||||||||| |||||||||||||| |||||||||    
T  34374007 tgaatgacatgtggcaaaaaatgattcaatggtttagattaaaaataaataaaacatca 34374065  T

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Target: scaffold0060 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 11167 - 11221
Alignment:
Q  55 tgaatgacatgtgg-aagaaagggattcaatggttcagattaaaaataaacaaaa 108  Q
    |||||||||||||| || ||| ||||||||||||||||||||||||||| |||||    
T  11167 tgaatgacatgtggtaaaaaaaggattcaatggttcagattaaaaataatcaaaa 11221  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 6356433 - 6356377
Alignment:
Q  55 tgaatgacatgtggaagaaagggattcaatggttcagattaaaaataaacaaaacat 111  Q
    |||||||||||||| | |||  |||||||| ||||||||| ||||||| ||||||||    
T  6356433 tgaatgacatgtggtaaaaatcgattcaattgttcagatttaaaataatcaaaacat 6356377  T

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