View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1291_high_26 (Length: 354)
Name: NF1291_high_26
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1291_high_26 |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 293 - 354
Target Start/End: Complemental strand, 12869769 - 12869708
Alignment:
| Q |
293 |
tcttctcttgttatggcagattggcagtagcaatgttatcacggcccacccacattttgttc |
354 |
Q |
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| T |
12869769 |
tcttctcttgttatggcagattggcagtagcaatgttatcacggcccacccacattttgttc |
12869708 |
T |
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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 293 - 354
Target Start/End: Original strand, 41594009 - 41594070
Alignment:
| Q |
293 |
tcttctcttgttatggcagattggcagtagcaatgttatcacggcccacccacattttgttc |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41594009 |
tcttctcttgttatggcagattggcagtagcaatgttatcacggcccacccacattttgttc |
41594070 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 14006881 - 14006939
Alignment:
| Q |
296 |
tctcttgttatggcagattggcagtagcaatgttatcacggcccacccacattttgttc |
354 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14006881 |
tctcttgttatggcagattggcagtagcaatgttatcacggcccacccacattttgttc |
14006939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 314 - 354
Target Start/End: Complemental strand, 23123836 - 23123796
Alignment:
| Q |
314 |
tggcagtagcaatgttatcacggcccacccacattttgttc |
354 |
Q |
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| T |
23123836 |
tggcagtagcaatgttatcacggctcacccacattttgttc |
23123796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 346
Target Start/End: Complemental strand, 23123908 - 23123876
Alignment:
| Q |
314 |
tggcagtagcaatgttatcacggcccacccaca |
346 |
Q |
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| T |
23123908 |
tggcagtagcaatgttatcacggcccacccaca |
23123876 |
T |
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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 293 - 354
Target Start/End: Original strand, 43522613 - 43522674
Alignment:
| Q |
293 |
tcttctcttgttatggcagattggcagtagcaatgttatcacggcccacccacattttgttc |
354 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43522613 |
tcttctcttgctatggcagattggcagtagcaatgttatcacggcccacccacattttgttc |
43522674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 36799853 - 36799798
Alignment:
| Q |
238 |
actcttgatcttctctccaaaatttagagagatgtacatagtggatgtagaatatt |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36799853 |
actcttgatcttctctccaaaatttagagagatgtacatagtggatgttgaatatt |
36799798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 36800061 - 36800015
Alignment:
| Q |
30 |
tgtagtacccaaaaagaattcatacctttagctatgcggtggtaatt |
76 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36800061 |
tgtagtacccaaaaagaattcatacctttagctatgcggtagtaatt |
36800015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 314 - 354
Target Start/End: Complemental strand, 22512411 - 22512371
Alignment:
| Q |
314 |
tggcagtagcaatgttatcacggcccacccacattttgttc |
354 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
22512411 |
tggcagtagcaatgttatcacggcccacccacattttgttc |
22512371 |
T |
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