View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1291_high_37 (Length: 297)
Name: NF1291_high_37
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1291_high_37 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 13651514 - 13651785
Alignment:
| Q |
1 |
ttcacataacattcctaaacactgagtacatccacaacagactcattaatttgaat---gatgatgttaaatcaatttcacaatgttaccctaagcttca |
97 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13651514 |
ttcacataacattcctaaacactgaatacatccacaacagactcattagtttgaatattgatgatgttaaatcaatttcacaatgttaccctaagcttca |
13651613 |
T |
|
| Q |
98 |
attcaagaccatctctgattttcaaaataaggagaagcatcctggatttggagaaaacattgtagatgtaatttcctccataaatatgtatggtaagcct |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13651614 |
attcaagaccatctctgattttcaaaataaggagaagcatcctggatttggagaaaacattgtagatgtaatttcctccataaatatgtatggtaagcct |
13651713 |
T |
|
| Q |
198 |
tctttgagagacattgttgtctctgagaaaataagttgcattattttagatggaggttttggtgaccttgct |
269 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13651714 |
tctttgagagacattattgtctctgagaaaataagttgcattattttagatggaggttttggtgaccttgct |
13651785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 79 - 269
Target Start/End: Original strand, 13656840 - 13657030
Alignment:
| Q |
79 |
aatgttaccctaagcttcaattcaagaccatctctgattttcaaaataaggagaagcatcctggatttggagaaaacattgtagatgtaatttcctccat |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | | ||||||| |||||||||||||||||||| | | |||||||||| || | |
|
|
| T |
13656840 |
aatgttaccctaagcttcaattcaagaccatctctgattttcacagtgaggagaaacatcctggatttggagaaaaggtaggtgatgtaattttgtcact |
13656939 |
T |
|
| Q |
179 |
aaatatgtatggtaagccttctttgagagacattgttgtctctgagaaaataagttgcattattttagatggaggttttggtgaccttgct |
269 |
Q |
| |
|
| | ||||||||||||||| |||| ||| || ||||||| ||||||||||||||||||||||| |||||| |||||||| |||||| |
|
|
| T |
13656940 |
gagtttgtatggtaagcctttgttgaaagatataattgtctccgagaaaataagttgcattattttggatggaatatttggtgatcttgct |
13657030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 79 - 269
Target Start/End: Original strand, 13646514 - 13646704
Alignment:
| Q |
79 |
aatgttaccctaagcttcaattcaagaccatctctgattttcaaaataaggagaagcatcctggatttggagaaaacattgtagatgtaatttcctccat |
178 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| | | | ||||||||||||||||||||||||| || | ||||||||| | || | |
|
|
| T |
13646514 |
aatgttaccctaagcttcaattcaagactatctctgattttcatagtgaagagaagcatcctggatttggagaaaggataggtgatgtaattacgtcact |
13646613 |
T |
|
| Q |
179 |
aaatatgtatggtaagccttctttgagagacattgttgtctctgagaaaataagttgcattattttagatggaggttttggtgaccttgct |
269 |
Q |
| |
|
| | ||||||||||||||| |||| ||| || ||||||| ||||||||||||||||||||||| |||||| |||||||| |||||| |
|
|
| T |
13646614 |
gagtttgtatggtaagcctttgttgaaagatataattgtctccgagaaaataagttgcattattttggatggaatatttggtgatcttgct |
13646704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University