View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1291_high_4 (Length: 874)
Name: NF1291_high_4
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1291_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 533 - 789
Target Start/End: Complemental strand, 39664854 - 39664602
Alignment:
| Q |
533 |
ctcatcagcattaaattacagtatttggaaatacatttcctcctttattctcagacttatcagttttt-cacatctagtctagggttagggcttggcaaa |
631 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
39664854 |
ctcatcagcattaaattacagtatttggaaatacatttcctcctttattctcggacttatcagttttttcacatctag-----ggttagggcttggcaaa |
39664760 |
T |
|
| Q |
632 |
aacaggcccaatccaacccactaagtctaaaccgtcattttctatatagatagcattggacaagcagaaaaccctaggaaataaacctagtgatcacggc |
731 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39664759 |
aacaggcccaatccaacccactaagtctaaaccgtcattttatatatagatagcattggacaagcagaaaaccctaggaaataaacctagtgatcacggc |
39664660 |
T |
|
| Q |
732 |
agttccagaacagtttttgtatcatgtcggaggaagaaatacgtaaggttcatgtggt |
789 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
39664659 |
agttccagaacagtttttgtatcatgtcggaggaagaaatacgtaaggcttatgtggt |
39664602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 353 - 532
Target Start/End: Complemental strand, 39665074 - 39664895
Alignment:
| Q |
353 |
tttattcaaaaggagtaaagctaattttattcacacaaataataacaaccatgaattctctgcgatgctctaaaacaaaaatcacacaagttaagccagg |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39665074 |
tttattcaaaaggagtaaagctaattttattcacacaaataataacaaccacgaattctctgcgatgctctaaaacaaaaatcacacaagttaagccagg |
39664975 |
T |
|
| Q |
453 |
attatctaactgaaacaggattatcaggtgagtttgaaatataccccataatctattttttgagccgtgttattattggt |
532 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39664974 |
attatctaaccgaaacaggattatcaggtgagtttgaaatataccccataatctattttttgagccgtgttattattggt |
39664895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 188 - 355
Target Start/End: Complemental strand, 39670195 - 39670031
Alignment:
| Q |
188 |
ggataatccatgcacaaacaaatccattcacataagcacttagaaaattaattaatatagttctattttgataaaccatacaaattttatctataacttc |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39670195 |
ggataatccatgcacaaacaaatccattcacataagcacttagaaaattaattaatatagttctattttgataaaccatacaaattttatct---acttc |
39670099 |
T |
|
| Q |
288 |
ccatattctggtcactatttcaatctcaatgcaaaattattattatcagggtcatgcctccaagattt |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39670098 |
ccatattctggtcactatttcaatctcaatgcaaaattattattatcagggtcatgcctccaagattt |
39670031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 39670374 - 39670305
Alignment:
| Q |
8 |
caccacagagcatgaaagagacccacggcttacctcacatccacattacaacgaggatataaccataaag |
77 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39670374 |
caccagagagcatgaaagagacccacggcttacctcacatccacattacaacgaggatataaccataaag |
39670305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 409 - 443
Target Start/End: Complemental strand, 39658307 - 39658273
Alignment:
| Q |
409 |
tctctgcgatgctctaaaacaaaaatcacacaagt |
443 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39658307 |
tctctgccatgctctaaaacaaaaatcacacaagt |
39658273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University