View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1291_high_41 (Length: 289)
Name: NF1291_high_41
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1291_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 48 - 218
Target Start/End: Complemental strand, 35542740 - 35542570
Alignment:
| Q |
48 |
agagatgatgatgactgtaggcaatattctgacatagatattgaaagagacgatgaatgtgggatatgcatggagatgaatagtaaaattgtgttgccta |
147 |
Q |
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| T |
35542740 |
agagatgatgatgactgtaggcaatcttctgacatagatattgaaagagacgatgaatgtgggatatgcatggagatgaatagtaaaattgtgttgccta |
35542641 |
T |
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| Q |
148 |
actgtaatcatgttatgtgcctcaagtgttaccgagaatggtactcactgccccttctctttctctatctt |
218 |
Q |
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| T |
35542640 |
actgtaatcatgttatgtgcctcaagtgttaccgagaatggtactcactgccccttctctttctctatctt |
35542570 |
T |
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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 193
Target Start/End: Complemental strand, 3458279 - 3458164
Alignment:
| Q |
78 |
gacatagatattgaaagagacgatgaatgtgggatatgcatggagatgaatagtaaaattgtgttgcctaactgtaatcatgttatgtgcctcaagtgtt |
177 |
Q |
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| T |
3458279 |
gacatagactttgaaagagaagaagagtgtggaatatgtatggagatgaatagtaagattgtgttgcctaactgcaaccatgtcatgtgcctgaaatgtt |
3458180 |
T |
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| Q |
178 |
accgagaatggtactc |
193 |
Q |
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| T |
3458179 |
accatgaatggtactc |
3458164 |
T |
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