View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1291_high_43 (Length: 282)
Name: NF1291_high_43
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1291_high_43 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 253
Target Start/End: Complemental strand, 22138408 - 22138162
Alignment:
| Q |
7 |
gcaccacagacatgtaatcttcctgttaattagtttgagtttcattcttgtattccattcgattgactataactcttcgttcaatgtctcaggtgataaa |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22138408 |
gcactacagacatgtaatcttcctgttaattagtttgagtttcattcttgtattacattcgattgactataactcttcgttcaatgtctcaggtgataaa |
22138309 |
T |
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| Q |
107 |
tcatcaacggattgggacaaggcatggtcaaacttcaagaagcagggnnnnnnnnctctcttctcaaatttttctccaaataaatatgtgagctggaatc |
206 |
Q |
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| T |
22138308 |
tcatcaacggattgggacaaggcatggtcaaacttcaagaagcagggaaaaaaaactctcttctcaaatttttctccaaataaatatgtgagctggaatc |
22138209 |
T |
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| Q |
207 |
ctaggcgttcagattttccactttctgaagaggttgatcctatcaag |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22138208 |
ctaggcgttcagattttccactttctgaagaggttgatcctatcaag |
22138162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 253
Target Start/End: Complemental strand, 40505917 - 40505671
Alignment:
| Q |
7 |
gcaccacagacatgtaatcttcctgttaattagtttgagtttcattcttgtattccattcgattgactataactcttcgttcaatgtctcaggtgataaa |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40505917 |
gcactacagacatgtaatcttcctgttaattagtttgagtttcattcttgtattacattcgattgactataactcttcgttcaatgtctcaggtgataaa |
40505818 |
T |
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| Q |
107 |
tcatcaacggattgggacaaggcatggtcaaacttcaagaagcagggnnnnnnnnctctcttctcaaatttttctccaaataaatatgtgagctggaatc |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40505817 |
tcatcaacggattgggacaaggcatggtcaaacttcaagaagcagggaaaaaaaactctcttctcaaatttttctccaaataaatatgtgagctggaatc |
40505718 |
T |
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| Q |
207 |
ctaggcgttcagattttccactttctgaagaggttgatcctatcaag |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40505717 |
ctaggcgttcagattttccactttctgaagaggttgatcctatcaag |
40505671 |
T |
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