View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1291_high_44 (Length: 277)

Name: NF1291_high_44
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1291_high_44
NF1291_high_44
[»] chr8 (4 HSPs)
chr8 (137-243)||(4297217-4297323)
chr8 (137-227)||(4787865-4787955)
chr8 (137-185)||(1846224-1846272)
chr8 (142-235)||(4619429-4619522)
[»] chr1 (3 HSPs)
chr1 (137-235)||(45984143-45984241)
chr1 (137-195)||(40035180-40035238)
chr1 (137-185)||(7891449-7891497)
[»] chr7 (1 HSPs)
chr7 (40-138)||(14716302-14716400)
[»] chr3 (1 HSPs)
chr3 (48-136)||(16207061-16207149)
[»] chr2 (4 HSPs)
chr2 (40-136)||(1919219-1919315)
chr2 (137-198)||(33860569-33860630)
chr2 (137-185)||(34690581-34690629)
chr2 (137-185)||(34712993-34713041)
[»] chr6 (2 HSPs)
chr6 (71-137)||(29602710-29602776)
chr6 (40-136)||(16804753-16804849)
[»] chr5 (1 HSPs)
chr5 (40-137)||(22376437-22376534)
[»] chr4 (1 HSPs)
chr4 (137-227)||(4231200-4231290)


Alignment Details
Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 4297217 - 4297323
Alignment:
Q  137 atctccacagatttgacttcagcttgcagcccagttggggcaaaagtcacagacattccagggcgcaagcaaccagtctcgacacgtcccataggcacat 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  4297217 atctccacagatttgacttcagcttgcagcccagttggggcaaaagtcacagacattccagggcgcaagcaaccagtctcgacacggcccacaggcacat 4297316  T
Q  237 ctctgat 243  Q
    |||||||    
T  4297317 ctctgat 4297323  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 4787955 - 4787865
Alignment:
Q  137 atctccacagatttgacttcagcttgcagcccagttggggcaaaagtcacagacattccagggcgcaagcaaccagtctcgacacgtccca 227  Q
    |||| |||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4787955 atcttcacagattggacttcaatttgcagcccagttggggcaaaagtcacagacattccagggcacaagcaaccagtctcgacacgtccca 4787865  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 1846224 - 1846272
Alignment:
Q  137 atctccacagatttgacttcagcttgcagcccagttggggcaaaagtca 185  Q
    ||||||||||| || ||||||| ||| ||||||||||||||||||||||    
T  1846224 atctccacagacttcacttcagtttggagcccagttggggcaaaagtca 1846272  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 4619429 - 4619522
Alignment:
Q  142 cacagatttgacttcagcttgcagcccagttggggcaaaagtcacagacattccagggcgcaagcaaccagtctcgacacgtcccataggcaca 235  Q
    |||||| || |||||||||||||||||| | ||||||||||||||   |||||||||   ||||  ||| ||||| |||| ||||| |||||||    
T  4619429 cacagactttacttcagcttgcagcccaatcggggcaaaagtcaccatcattccaggtttcaagacaccggtctcaacacatcccacaggcaca 4619522  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 137 - 235
Target Start/End: Complemental strand, 45984241 - 45984143
Alignment:
Q  137 atctccacagatttgacttcagcttgcagcccagttggggcaaaagtcacagacattccagggcgcaagcaaccagtctcgacacgtcccataggcaca 235  Q
    ||||||||||| || |||||||||||||||||||||| |||||||||||    ||||||||||  |||| |||||||||| |||||||||| |||||||    
T  45984241 atctccacagacttcacttcagcttgcagcccagttgcggcaaaagtcagcaccattccagggttcaaggaaccagtctcaacacgtcccacaggcaca 45984143  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 195
Target Start/End: Complemental strand, 40035238 - 40035180
Alignment:
Q  137 atctccacagatttgacttcagcttgcagcccagttggggcaaaagtcacagacattcc 195  Q
    |||||||||||  | ||||||| ||||| ||||||||||||||||||||||| ||||||    
T  40035238 atctccacagacctcacttcagtttgcaccccagttggggcaaaagtcacagccattcc 40035180  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 7891497 - 7891449
Alignment:
Q  137 atctccacagatttgacttcagcttgcagcccagttggggcaaaagtca 185  Q
    ||||||||||| || ||||||| ||| ||||||||||||||||||||||    
T  7891497 atctccacagacttcacttcagtttggagcccagttggggcaaaagtca 7891449  T

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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 14716302 - 14716400
Alignment:
Q  40 ccacagacggaaaagcgttctgatagactacagcaacagttatttcctattttgctacacgttcttggcgttgtcgtaggatgaatctgttgtagtgat 138  Q
    |||||||| ||||||||||||| ||||| |||||||||||| ||||  |||||||||| | || ||| |||||||||| ||||||  ||||||||||||    
T  14716302 ccacagacagaaaagcgttctggtagacaacagcaacagttttttcacattttgctacgcttttttgccgttgtcgtaagatgaaaatgttgtagtgat 14716400  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 136
Target Start/End: Original strand, 16207061 - 16207149
Alignment:
Q  48 ggaaaagcgttctgatagactacagcaacagttatttcctattttgctacacgttcttggcgttgtcgtaggatgaatctgttgtagtg 136  Q
    |||||||||||||| ||||  |||||||||||| |||| |||||||| |||| || |||| ||||||||||||||||  ||||||||||    
T  16207061 ggaaaagcgttctggtagaaaacagcaacagttttttcatattttgcaacacatttttggtgttgtcgtaggatgaaaatgttgtagtg 16207149  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 136
Target Start/End: Complemental strand, 1919315 - 1919219
Alignment:
Q  40 ccacagacggaaaagcgttctgatagactacagcaacagttatttcctattttgctacacgttcttggcgttgtcgtaggatgaatctgttgtagtg 136  Q
    |||||||| ||||||||||||| ||||| |||||||||||| ||||  ||||||||||   || |||||||||||||| ||||||  ||||||||||    
T  1919315 ccacagacagaaaagcgttctggtagacaacagcaacagttttttcacattttgctacgtttttttggcgttgtcgtaagatgaaaatgttgtagtg 1919219  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 33860569 - 33860630
Alignment:
Q  137 atctccacagatttgacttcagcttgcagcccagttggggcaaaagtcacagacattccagg 198  Q
    |||| |||||| | |||| || |||||||||||||||||||||||||||| | |||||||||    
T  33860569 atctgcacagactcgactacatcttgcagcccagttggggcaaaagtcaccgccattccagg 33860630  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 34690581 - 34690629
Alignment:
Q  137 atctccacagatttgacttcagcttgcagcccagttggggcaaaagtca 185  Q
    |||| |||||| || ||| ||| ||||||||||||||||||||||||||    
T  34690581 atctgcacagacttaactccagattgcagcccagttggggcaaaagtca 34690629  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 34712993 - 34713041
Alignment:
Q  137 atctccacagatttgacttcagcttgcagcccagttggggcaaaagtca 185  Q
    |||| |||||| || ||| ||| ||||||||||||||||||||||||||    
T  34712993 atctgcacagacttaactccagattgcagcccagttggggcaaaagtca 34713041  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 29602710 - 29602776
Alignment:
Q  71 agcaacagttatttcctattttgctacacgttcttggcgttgtcgtaggatgaatctgttgtagtga 137  Q
    |||||||||||||||  |||||||||| | || |||||||||||||||||||||| |||||||||||    
T  29602710 agcaacagttatttcgcattttgctacgcttttttggcgttgtcgtaggatgaatatgttgtagtga 29602776  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 136
Target Start/End: Complemental strand, 16804849 - 16804753
Alignment:
Q  40 ccacagacggaaaagcgttctgatagactacagcaacagttatttcctattttgctacacgttcttggcgttgtcgtaggatgaatctgttgtagtg 136  Q
    |||||||| ||||||||||||| ||||| |||||||||||| ||||  | |||||||| | || ||||||||| |||| ||||||  ||||||||||    
T  16804849 ccacagacagaaaagcgttctggtagacaacagcaacagttttttcacagtttgctacgcttttttggcgttgccgtaagatgaaaatgttgtagtg 16804753  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 137
Target Start/End: Original strand, 22376437 - 22376534
Alignment:
Q  40 ccacagacggaaaagcgttctgatagactacagcaacagttatttcctattttgctacacgttcttggcgttgtcgtaggatgaatctgttgtagtga 137  Q
    |||||||  ||||||||||||| ||||| |||||||||||| ||||  |||||||||| | || ||||||||  |||| ||||||  |||||||||||    
T  22376437 ccacagatagaaaagcgttctggtagacaacagcaacagttttttcacattttgctacgcttttttggcgtttccgtaagatgaaaatgttgtagtga 22376534  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 4231200 - 4231290
Alignment:
Q  137 atctccacagatttgacttcagcttgcagcccagttggggcaaaagtcacagacattccagggcgcaagcaaccagtctcgacacgtccca 227  Q
    ||||||||||| |||||||||| |||||| |||||||| |||||||||||   |||||||||   || |  ||||||||| ||||||||||    
T  4231200 atctccacagacttgacttcagtttgcagtccagttggagcaaaagtcaccaccattccaggtttcatggtaccagtctcaacacgtccca 4231290  T

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