View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1291_high_53 (Length: 255)
Name: NF1291_high_53
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1291_high_53 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 69 - 235
Target Start/End: Original strand, 43522921 - 43523087
Alignment:
| Q |
69 |
gaaaacagaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctc |
168 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43522921 |
gaaaacagaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctc |
43523020 |
T |
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| Q |
169 |
catctcaacctgttaaagttccaagaattgaagaagacataactcatatgactcaacctgatgatgt |
235 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43523021 |
catctcaacctattaaagttccaagaattgaagaagacataactcatatgactcaacctgttgatgt |
43523087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 4113276 - 4113372
Alignment:
| Q |
106 |
ttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctccatctcaacctgttaaagttccaagaattgaagaa |
203 |
Q |
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| T |
4113276 |
ttgatcattttt-taaaaggaaagtttgtgggagtgaaagagatgaacaaagaatatcttatacatcacaacctgttaaagttttaagaattgaagaa |
4113372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 69 - 235
Target Start/End: Complemental strand, 12869461 - 12869295
Alignment:
| Q |
69 |
gaaaacagaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctc |
168 |
Q |
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| T |
12869461 |
gaaaacagaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctc |
12869362 |
T |
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| Q |
169 |
catctcaacctgttaaagttccaagaattgaagaagacataactcatatgactcaacctgatgatgt |
235 |
Q |
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| T |
12869361 |
catctcaacctattaaagtttcaagaattgaagaagacataactcatatgactcaacctgttgatgt |
12869295 |
T |
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Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 69 - 235
Target Start/End: Original strand, 14007175 - 14007341
Alignment:
| Q |
69 |
gaaaacagaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctc |
168 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14007175 |
gaaaacagaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagtttgtgagagtgaaagagatgaacaaggaatgactcctc |
14007274 |
T |
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| Q |
169 |
catctcaacctgttaaagttccaagaattgaagaagacataactcatatgactcaacctgatgatgt |
235 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14007275 |
catctcaacctattaaagttccaagaattgaagaagacataactcatatgactcaacctgttgatgt |
14007341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 75 - 204
Target Start/End: Complemental strand, 23123620 - 23123491
Alignment:
| Q |
75 |
agaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctccatctc |
174 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23123620 |
agaaaagttaagaagaagaagagtataacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctccatctc |
23123521 |
T |
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| Q |
175 |
aacctgttaaagttccaagaattgaagaag |
204 |
Q |
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|||||||||||||| | | ||||||||||| |
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| T |
23123520 |
aacctgttaaagtttccataattgaagaag |
23123491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 23123478 - 23123412
Alignment:
| Q |
169 |
catctcaacctgttaaagttccaagaattgaagaagacataactcatatgactcaacctgatgatgt |
235 |
Q |
| |
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||||||||||| || | |||||||||||| |||||||||||| ||||||||||||||||| |||||| |
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| T |
23123478 |
catctcaacctattgatgttccaagaattaaagaagacataattcatatgactcaacctgttgatgt |
23123412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 23123427 - 23123364
Alignment:
| Q |
172 |
ctcaacctgttaaagttccaagaattgaagaagacataactcatatgactcaacctgatgatgt |
235 |
Q |
| |
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||||||||||| | ||||||||||||||||||||||||||||||| ||||||| || |||||| |
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| T |
23123427 |
ctcaacctgttgatgttccaagaattgaagaagacataactcatacaactcaacatgttgatgt |
23123364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 69 - 235
Target Start/End: Original strand, 41594317 - 41594480
Alignment:
| Q |
69 |
gaaaacagaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctc |
168 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41594317 |
gaaaacagaaaagttaaga---agaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctc |
41594413 |
T |
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| Q |
169 |
catctcaacctgttaaagttccaagaattgaagaagacataactcatatgactcaacctgatgatgt |
235 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41594414 |
catctcaacctattaaagttccaagaattgaagaagacataactcatatgactcaacctgttgatgt |
41594480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 42452749 - 42452878
Alignment:
| Q |
72 |
aacagaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctccat |
171 |
Q |
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|||||||||||||||| |||||||| |||||||| ||||||||||||||| || | |||||||||||| |||||||||||||||||||||| ||||| |
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| T |
42452749 |
aacagaaaagttaaga---agaagagtataacacttaatcatttttataagaggaaactttgtgagagtgacagagatgaacaaggaatgactcttccat |
42452845 |
T |
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| Q |
172 |
ctcaacctgttaaagttccaagaattgaagaag |
204 |
Q |
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|||| ||||||||||||| ||||||||||||| |
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| T |
42452846 |
ctcatcctgttaaagttctcagaattgaagaag |
42452878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 69 - 235
Target Start/End: Complemental strand, 22512163 - 22512000
Alignment:
| Q |
69 |
gaaaacagaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctc |
168 |
Q |
| |
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||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22512163 |
gaaaacagaaaagttaagaagaaga---gtataacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctc |
22512067 |
T |
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| Q |
169 |
catctcaacctgttaaagttccaagaattgaagaagacataactcatatgactcaacctgatgatgt |
235 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22512066 |
catctcaacctgttaaagttccatgaattgaagaagacataactcatatgactcaacctgttgatgt |
22512000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 22512015 - 22511952
Alignment:
| Q |
172 |
ctcaacctgttaaagttccaagaattgaagaagacataactcatatgactcaacctgatgatgt |
235 |
Q |
| |
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||||||||||| | ||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
22512015 |
ctcaacctgttgatgttccaagaattgaagaagacataactcatacaactcaacctgttgatgt |
22511952 |
T |
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