View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1291_high_57 (Length: 251)
Name: NF1291_high_57
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1291_high_57 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 3 - 243
Target Start/End: Original strand, 26381123 - 26381364
Alignment:
| Q |
3 |
cctatgatccaactagtggatgatagagttgattcttatgaacgaataataaa-tttaaaagaaaattgcatgtcttaaatctatgtcattgtcaaggac |
101 |
Q |
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| T |
26381123 |
cctatgatccaaccagtggatgatagagttggttcttatgaacgaataataaagtttaaaagaaaattgcatgtcttaaatctatgtcattgtcaaggac |
26381222 |
T |
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| Q |
102 |
ccaagatcaataagtgtttgcatgttttaagagctacatgagaatttcatgaattctcaagagcttaatttttctcttttagattaatgttgcttgtgca |
201 |
Q |
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| T |
26381223 |
ccaagatcaataagtgtttgcatgttttaagagctacatgagaatttcatgaattctcaacagcttattttttctcttttagattaatgttgcttgtgca |
26381322 |
T |
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| Q |
202 |
tatcagctttggcataatgcttaaagtttgttagcctatgat |
243 |
Q |
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| T |
26381323 |
tatcagctttggcataatgcttaaagtttgttagtctatgat |
26381364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 47 - 192
Target Start/End: Complemental strand, 21041199 - 21041055
Alignment:
| Q |
47 |
aataataaatttaaaagaaaattgcatgtcttaaatctatgtcattgtcaaggacccaagatcaataagtgtttgcatgttttaagagctacatgagaat |
146 |
Q |
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| T |
21041199 |
aataatacgtttaaaaaaaaattgcatatcttaaatctatgtcattgtcaag-acccaagatcaataagtgtgtgcttgttttaagagctacatgagaat |
21041101 |
T |
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| Q |
147 |
ttcatgaattctcaagagcttaatttttctcttttagattaatgtt |
192 |
Q |
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| T |
21041100 |
ttcatggattctcaacagtttaatttttctcttttagattaatgtt |
21041055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 21041010 - 21040970
Alignment:
| Q |
202 |
tatcagctttggcataatgcttaaagtttgttagcctatga |
242 |
Q |
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| T |
21041010 |
tatcagctttggcataatgcttaaagtttgttagtctatga |
21040970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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