View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1291_low_1 (Length: 1165)

Name: NF1291_low_1
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1291_low_1
NF1291_low_1
[»] chr1 (13 HSPs)
chr1 (547-1121)||(29254870-29255464)
chr1 (104-544)||(33861425-33861875)
chr1 (104-544)||(33919047-33919497)
chr1 (584-1121)||(13263774-13264321)
chr1 (570-700)||(9981375-9981505)
chr1 (553-715)||(29254657-29254820)
chr1 (547-674)||(17238399-17238527)
chr1 (547-674)||(6632008-6632136)
chr1 (547-660)||(6631316-6631429)
chr1 (547-673)||(17237705-17237832)
chr1 (615-715)||(13264371-13264472)
chr1 (544-595)||(19990273-19990324)
chr1 (544-595)||(47966992-47967043)
[»] chr4 (3 HSPs)
chr4 (591-1117)||(32526833-32527376)
chr4 (542-692)||(32527453-32527604)
chr4 (543-589)||(27110485-27110531)
[»] chr2 (8 HSPs)
chr2 (545-1079)||(30617392-30617946)
chr2 (547-660)||(41320009-41320122)
chr2 (551-673)||(13545291-13545414)
chr2 (547-711)||(13544598-13544762)
chr2 (547-674)||(41320703-41320831)
chr2 (555-622)||(11169280-11169347)
chr2 (541-621)||(8143321-8143402)
chr2 (547-624)||(15555016-15555093)
[»] chr3 (3 HSPs)
chr3 (547-660)||(52362640-52362753)
chr3 (547-651)||(16674246-16674350)
chr3 (572-674)||(16673555-16673658)
[»] chr5 (3 HSPs)
chr5 (543-674)||(41516456-41516588)
chr5 (547-595)||(8469813-8469861)
chr5 (610-673)||(41517157-41517221)
[»] chr6 (4 HSPs)
chr6 (564-706)||(14125165-14125308)
chr6 (1006-1092)||(14125355-14125439)
chr6 (792-843)||(14125605-14125656)
chr6 (543-589)||(2479292-2479338)


Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 547 - 1121
Target Start/End: Complemental strand, 29255464 - 29254870
Alignment:
Q  547 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 646  Q
    ||||||||||||| |||| |||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29255464 ggagggatatattgactctaagagtaagtttctagacttacaccaaatcacaacctttcattgtattttaatctaatggcttgaatgatagttttaaatg 29255365  T
Q  647 ttaatcatgtgacctctttttggatctccatccaaataaaaactttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactc 746  Q
    |||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29255364 ttaatcatatgacctctttttggatctccatccaaataaagacattctccaattattctcccttaattaaacaaaaatctcgttcctcttaaactcactc 29255265  T
Q  747 ttaaatgtgtttgtttttaatttcagttaaaataac-aannnnnnnaactccattatataagtaactcgcccaattgaatttgtatataccatccata-- 843  Q
    ||||||||||| |||||||||||||||||||||||| ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  29255264 ttaaatgtgttcgtttttaatttcagttaaaataacaaaaaattttaactccattatataagtaactcgcccaattgaatttgtatataccatccatatt 29255165  T
Q  844 --nnnnnnnngagggaatataccatccatatttcttttgattg------gatcatgacaggagttagaatggtgggtttaccttgcactccacagcctcg 935  Q
               ||||||||||||||||||||||||||||||||      |||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  29255164 tttttttttttagggaatataccatccatatttcttttgattggatattgatcatgacaggagttagaatggtaggtttaccttccactccacagcctcg 29255065  T
Q  936 tctctacatgctcccattctctgccattggttttatgtattaatatttctttcttttttggataaccagtagtgctttgcaatcgaagttgaaagca--- 1032  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||       
T  29255064 tctctacatgctcccattctctgtcattggttttatgtattaatatttctttcttttttggataaccagtggtgctttgcaatcgaagttgaaagcaata 29254965  T
Q  1033 ------atataatttgtagaatttataatgcaaccttatgataatattcgaagaaaagactgaaaacacttattgaattgggagaggtatttatg 1121  Q
          |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||    
T  29254964 taatttatataatttgtagaatttgtaatgcaaccttatgataatattcgaagaaaagactgaaaaaactttttgaattgggagacgtatttatg 29254870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 104 - 544
Target Start/End: Complemental strand, 33861875 - 33861425
Alignment:
Q  104 tcttgatcttttcacttgtagggcattattctgaactcaatttgaaatgactatagagtagagtactgatacatttgtattttctcatgtaaagtccata 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33861875 tcttgatcttttcacttgtagggcattattctgaactcaatttgaaatgactatagagtagagtactgatacatttgtattttctcatgtaaagtccata 33861776  T
Q  204 acaccttctcaatgtaatttcgttgagacaaccacaattttaccattcatattgtcacaactcacaagtaattctcatgccaaggattttctttgcataa 303  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33861775 acaccttctcaatgtaattgcgttgagacaaccacaattt-accattcatattgtcacaactcacaagtaattctcatgccaaggattttctttgcataa 33861677  T
Q  304 ccaaagttcttcattgcaaaagacttgcttaaatcttgcaagacaagaacaacctaacgagatctacatcttttatccttttaccttctaccacttaag- 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  33861676 ccaaagttcttcattgcaaaagacttgcttaaatcttgcaagacaagaacaacctaatgagatctacatcttttatccttttaccttctaccacttaaga 33861577  T
Q  403 ----------aagtggtctattttacttgttagttttatacaactttagttttaaggtagtcaaatattgctaagacatgtcaaaattagcttatattga 492  Q
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33861576 aattttgtttaagtggtctattttacttgttagttttatacaactttagttttaaggtagtcaaatattgctaagacatgtcaaaattaacttatattga 33861477  T
Q  493 aacacaattaatattattattcgaaccgcttactacatgtatattctaaaaa 544  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33861476 aacacaattaatattagtattcgaaccgcttactacatgtatattctaaaaa 33861425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 104 - 544
Target Start/End: Original strand, 33919047 - 33919497
Alignment:
Q  104 tcttgatcttttcacttgtagggcattattctgaactcaatttgaaatgactatagagtagagtactgatacatttgtattttctcatgtaaagtccata 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33919047 tcttgatcttttcacttgtagggcattattctgaactcaatttgaaatgactatagagtagagtactgatacatttgtattttctcatgtaaagtccata 33919146  T
Q  204 acaccttctcaatgtaatttcgttgagacaaccacaattttaccattcatattgtcacaactcacaagtaattctcatgccaaggattttctttgcataa 303  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33919147 acaccttctcaatgtaattgcgttgagacaaccacaattt-accattcatattgtcacaactcacaagtaattctcatgccaaggattttctttgcataa 33919245  T
Q  304 ccaaagttcttcattgcaaaagacttgcttaaatcttgcaagacaagaacaacctaacgagatctacatcttttatccttttaccttctaccacttaag- 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  33919246 ccaaagttcttcattgcaaaagacttgcttaaatcttgcaagacaagaacaacctaatgagatctacatcttttatccttttaccttctaccacttaaga 33919345  T
Q  403 ----------aagtggtctattttacttgttagttttatacaactttagttttaaggtagtcaaatattgctaagacatgtcaaaattagcttatattga 492  Q
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33919346 aattttgtttaagtggtctattttacttgttagttttatacaactttagttttaaggtagtcaaatattgctaagacatgtcaaaattaacttatattga 33919445  T
Q  493 aacacaattaatattattattcgaaccgcttactacatgtatattctaaaaa 544  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33919446 aacacaattaatattagtattcgaaccgcttactacatgtatattctaaaaa 33919497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 584 - 1121
Target Start/End: Original strand, 13263774 - 13264321
Alignment:
Q  584 ttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacctctttttggatctccatccaaat 683  Q
    |||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13263774 ttactccaaatcacaacctttcattgtattttaatctaacggttcgaatgatagttttaaatgttaatcatgtgacctctttttg-atctccatccaaat 13263872  T
Q  684 aaaaactttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactcttaaatgtgtttgtttttaatttcagttaaaataaca 783  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13263873 aaagactttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactcttaaatgtgttcgtttttaatttcagttaaaataaca 13263972  T
Q  784 annnnnnn-aactccattatataagtaactcgcccaattgaatttgtatataccatccatannnnnnnn----gagggaatataccatccatatttcttt 878  Q
    |        ||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||| ||||||||||||    
T  13263973 aatttttttaactccattatataagtaactcgcccaattgaatttgtatataccatccatattttttttttttgagggaatataccaaccatatttcttt 13264072  T
Q  879 tgattggat------catgacaggagttagaatggtgggtttaccttgcactccacagcctcgtctctacatgctcccattctctgccattggttttatg 972  Q
    |||||||||      ||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||     
T  13264073 tgattggatattgatcatgacaggagttagaatggtaggtttaccttccattccacagcctcgtctctacatgctcccattctctaccattggttttata 13264172  T
Q  973 tattaatatttctttcttttttggataaccagtagtgctttgcaatcgaagttgaaagcaatataatttgtagaatttataatgcaaccttatgataata 1072  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| || ||||| |||||||||||||||||||||    
T  13264173 tattaatatttctttcttttttggataaccagtggtgctttgcaatcgaagttgaaagcaaaataatttatataatttgtaatgcaaccttatgataata 13264272  T
Q  1073 ttcgaagaaaagactgaaaacacttattgaattgggagaggtatttatg 1121  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||    
T  13264273 ttcgaagaaaagacggaaaacactttttgaattgggagaggtatttatg 13264321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 570 - 700
Target Start/End: Complemental strand, 9981505 - 9981375
Alignment:
Q  570 gtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacctctttttgg 669  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||    
T  9981505 gtaagtttgtagacttactccaaatcacaacctttcattgtattttaatctaacgacttgaatgataattttaaatgttaaacatgtgacctctttttgg 9981406  T
Q  670 atctccatccaaataaaaactttctccaatt 700  Q
    ||||||||||  ||||| |||||||||||||    
T  9981405 atctccatcctgataaagactttctccaatt 9981375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 553 - 715
Target Start/End: Original strand, 29254657 - 29254820
Alignment:
Q  553 atatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatc 652  Q
    |||| |||||||||||||||||||| ||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||    
T  29254657 atattttaactccaagagtaagtttgtagacttactccaaatcataacctttcattatattttaatctaacggcttgaatgatagtcttaattgttaatc 29254756  T
Q  653 atgtga-cctctttttggatctccatccaaataaaaactttctccaattattctcccttaatta 715  Q
    |||||| |||||||||| |||||| |||  ||||| ||||||||  |||||||||  |||||||    
T  29254757 atgtgaccctctttttgaatctccttcctcataaatactttctctgattattctcttttaatta 29254820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 547 - 674
Target Start/End: Complemental strand, 17238527 - 17238399
Alignment:
Q  547 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 646  Q
    |||||||||| || ||||||||||||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| || || ||||  |||||||| ||    
T  17238527 ggagggatattttgactccaagagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggtttaaatgtgagttttaattg 17238428  T
Q  647 ttaatcatgtgacc-tctttttggatctc 674  Q
    |||||||||||||| ||||||||||||||    
T  17238427 ttaatcatgtgaccatctttttggatctc 17238399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 547 - 674
Target Start/End: Complemental strand, 6632136 - 6632008
Alignment:
Q  547 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 646  Q
    |||||||||| |  ||||||||||||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| || || ||||  |||||||| ||    
T  6632136 ggagggatatttagactccaagagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggtttaaatgtgagttttaattg 6632037  T
Q  647 ttaatcatgtgacc-tctttttggatctc 674  Q
    |||||||||||||| ||||||||||||||    
T  6632036 ttaatcatgtgaccatctttttggatctc 6632008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 547 - 660
Target Start/End: Original strand, 6631316 - 6631429
Alignment:
Q  547 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 646  Q
    |||||||||| || |||||||| |||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| ||||| ||||  |||||||| ||    
T  6631316 ggagggatattttgactccaagggtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggcttaaatgtgagttttaattg 6631415  T
Q  647 ttaatcatgtgacc 660  Q
    ||||||||||||||    
T  6631416 ttaatcatgtgacc 6631429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 547 - 673
Target Start/End: Original strand, 17237705 - 17237832
Alignment:
Q  547 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 646  Q
    |||||||||| || ||| ||||||||||||| ||||||||||| ||||  | |||||||||  ||||||||||||| || || ||||  |||||||| ||    
T  17237705 ggagggatattttgactgcaagagtaagtttatagacttactccaaatatccacctttcatcttattttaatctaatggtttaaatgtgagttttaattg 17237804  T
Q  647 ttaatcatgtgacc-tctttttggatct 673  Q
    |||||||||||||| ||||| |||||||    
T  17237805 ttaatcatgtgaccatctttgtggatct 17237832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 615 - 715
Target Start/End: Complemental strand, 13264472 - 13264371
Alignment:
Q  615 taatctaacggcttgaatgatagttttaaatgttaatcatgtga-cctctttttggatctccatccaaataaaaactttctccaattattctcccttaat 713  Q
    |||||||||||||||||||||||| |||| |||||||||||||| |||||||||| |||||| |||  ||||| ||||| ||  |||||||||  |||||    
T  13264472 taatctaacggcttgaatgatagtcttaattgttaatcatgtgaccctctttttgaatctccttcctcataaatactttatctgattattctcttttaat 13264373  T
Q  714 ta 715  Q
    ||    
T  13264372 ta 13264371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 544 - 595
Target Start/End: Original strand, 19990273 - 19990324
Alignment:
Q  544 aggggagggatatattaactccaagagtaagtttttagacttactctaaatc 595  Q
    |||||||||||||||| ||||||||||||||| |  |||||||||| |||||    
T  19990273 aggggagggatatattgactccaagagtaagtctaaagacttactccaaatc 19990324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 544 - 595
Target Start/End: Original strand, 47966992 - 47967043
Alignment:
Q  544 aggggagggatatattaactccaagagtaagtttttagacttactctaaatc 595  Q
    |||||||||||||||| ||||||||||||||| |||| | |||||| |||||    
T  47966992 aggggagggatatattgactccaagagtaagtgtttaaagttactccaaatc 47967043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 591 - 1117
Target Start/End: Original strand, 32526833 - 32527376
Alignment:
Q  591 aaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacctctttttggatctccatccaaataaaaact 690  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  32526833 aaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacctctttttggatctccatccaaataaagact 32526932  T
Q  691 ttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactcttaaatgtgtttgtttttaatttcagttaaaataac--aannnn 788  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||  ||        
T  32526933 ttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactcttaaatgtgttcgttttttatttcagttaaaataacaaaaaaaa 32527032  T
Q  789 nnnaactccattatataagtaactcgcccaattgaatttgtatataccatccatannnnnnnngagggaatataccatccatatttcttttgattgg--- 885  Q
       |||||||||||||||||||||||||||||||||||| |||||||||||||||         |||||||||||||||||||||||||||||||||       
T  32527033 tttaactccattatataagtaactcgcccaattgaatttctatataccatccatatttttttttagggaatataccatccatatttcttttgattggata 32527132  T
Q  886 ---atcatgacaggagttagaatggtgggtttaccttgcactccacagcctcgtctctacatgctcccattctctgccattggttttatgtattaatatt 982  Q
       ||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32527133 ttaatcatgacaagagttagaatggtaggtttaccttccactccacagcctcgtctctacatgctcccattctctgccattggttttatgtattaatatt 32527232  T
Q  983 tctttcttttttggataaccagtagtgctttgcaatcgaagttgaaagca---------atataatttgtagaatttataatgcaaccttatgataatat 1073  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||         |||||||||||||||||| ||||||||||||||||||||||    
T  32527233 tctttcttttttggataaccagtggtgctttgcaatcgaagttgaaagcaatataatttatataatttgtagaatttgtaatgcaaccttatgataatat 32527332  T
Q  1074 tcgaagaaaagactgaaaacacttattgaattgggagaggtatt 1117  Q
    || || |||||||||||||||||| |||||||||||| ||||||    
T  32527333 tcaaaaaaaagactgaaaacactttttgaattgggaggggtatt 32527376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 542 - 692
Target Start/End: Complemental strand, 32527604 - 32527453
Alignment:
Q  542 aaaggggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagtttt 641  Q
    ||||||||| ||||| || |||| |||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||| ||    
T  32527604 aaaggggagagatattttgactctaagagtaagtttgtagacttactccaaatcacaacctttcattatattttaatctaacagcttgaatgatagtctt 32527505  T
Q  642 aaatgttaatcatgtga-cctctttttggatctccatccaaataaaaacttt 692  Q
    || |||||||||||||| |||||||||| |||||| |||  ||||| |||||    
T  32527504 aattgttaatcatgtgaccctctttttgaatctccttcctcataaatacttt 32527453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 543 - 589
Target Start/End: Complemental strand, 27110531 - 27110485
Alignment:
Q  543 aaggggagggatatattaactccaagagtaagtttttagacttactc 589  Q
    ||||||||||||||||| ||||||||||||||| |||| | ||||||    
T  27110531 aaggggagggatatattgactccaagagtaagtgtttaaagttactc 27110485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 545 - 1079
Target Start/End: Original strand, 30617392 - 30617946
Alignment:
Q  545 ggggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaa 644  Q
    ||||||||||||||| |||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30617392 ggggagggatatattgactcaaaaagtaagtttctagacttactctaaatcacaacctttcattgtattttaatctaacagcttgaatgatagttttaaa 30617491  T
Q  645 tgttaatcatgtgacctctttttggatctccatccaaataaaaactttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcac 744  Q
    | |||| ||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30617492 tattaaccatgtgacctctttttggatctccatccacacaaagactttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcac 30617591  T
Q  745 tcttaaatgtgtttgtttttaatttcagttaaaataacaa---nnnnnnnaactccattatataagtaactcgcccaattgaatttgtatataccatcca 841  Q
    ||||||||||||| ||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30617592 tcttaaatgtgttcgtttttaatttcagttaaaataacaaatttttttttaactccattatataagtaactcgcccaattgaattggtatataccatcca 30617691  T
Q  842 ta--nnnnnnnngagggaatataccatccatatttcttttgattg------gatcatgacaggagttagaatggtgggtttaccttgcactccacagcct 933  Q
    ||          |||||||||||||||||||||||||||||||||      |||||||| ||||||||||||||| |||||||||| ||||||| | |||    
T  30617692 tattttttttttgagggaatataccatccatatttcttttgattggatattgatcatgagaggagttagaatggtaggtttaccttccactccataacct 30617791  T
Q  934 cgtctctacatgctcccattctctgccattggttttatgtattaatatttctttcttttttggataaccagtagtgctttgcaatcgaagttgaaagca- 1032  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |     
T  30617792 cgtctctacatgttcccattctctgtcattggttttatgtattaatatttatttcttttttggataaccagtggtgctttgcaatcgaagttgaaaggaa 30617891  T
Q  1033 --------atataatttgtagaatttataatgcaaccttatgataatattcgaag 1079  Q
            |||||||||||||||||| ||||||||||||||||||||||||||||    
T  30617892 tataatttatataatttgtagaatttgtaatgcaaccttatgataatattcgaag 30617946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 547 - 660
Target Start/End: Original strand, 41320009 - 41320122
Alignment:
Q  547 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 646  Q
    |||||||||| || ||||||||||||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| ||||| ||||  |||||||| ||    
T  41320009 ggagggatattttgactccaagagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggcttaaatgtgagttttaattg 41320108  T
Q  647 ttaatcatgtgacc 660  Q
    ||||||||||||||    
T  41320109 ttaatcatgtgacc 41320122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 551 - 673
Target Start/End: Complemental strand, 13545414 - 13545291
Alignment:
Q  551 ggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaa 650  Q
    |||||| || ||||||||||||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| ||||| ||||   ||||||| ||||||    
T  13545414 ggatattttgactccaagagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggcttaaatgtgggttttaattgttaa 13545315  T
Q  651 tcatgtgacc-tctttttggatct 673  Q
    |||| ||||| ||||| |||||||    
T  13545314 tcatatgaccatctttgtggatct 13545291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 547 - 711
Target Start/End: Original strand, 13544598 - 13544762
Alignment:
Q  547 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 646  Q
    |||||||||| || ||| ||||||||||||| |||||||| || ||||| | |||||||||  |||||||||||||  | || ||||  |||||||| ||    
T  13544598 ggagggatattttgacttcaagagtaagtttatagacttattccaaatctccacctttcatcttattttaatctaatagtttaaatgtgagttttaattg 13544697  T
Q  647 ttaatcatgtgacc-tctttttggatctccatccaaataaaaactttctccaattattctccctta 711  Q
    |||||||||||||| | ||||||||||| ||| |  ||||| | |||||||| ||| |||||||||    
T  13544698 ttaatcatgtgaccatttttttggatct-cattcttataaatattttctccatttaatctccctta 13544762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 547 - 674
Target Start/End: Complemental strand, 41320831 - 41320703
Alignment:
Q  547 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 646  Q
    |||| ||||| || ||||||| ||||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| || || ||||  | |||||| ||    
T  41320831 ggagagatattttgactccaatagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggtttaaatgtgaattttaattg 41320732  T
Q  647 ttaatcatgtgacc-tctttttggatctc 674  Q
    ||||||||| |||| ||||||||||||||    
T  41320731 ttaatcatgcgaccatctttttggatctc 41320703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 555 - 622
Target Start/End: Original strand, 11169280 - 11169347
Alignment:
Q  555 atattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaa 622  Q
    ||||| ||||||||| ||||||| |||| |||||||||||| | |||||||||   ||||||||||||    
T  11169280 atattgactccaagaataagtttatagatttactctaaatctccacctttcatctcattttaatctaa 11169347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 541 - 621
Target Start/End: Complemental strand, 8143402 - 8143321
Alignment:
Q  541 aaaaggggagggatatattaactccaa-gagtaagtttttagacttactctaaatcacaacctttcattgtattttaatcta 621  Q
    |||||||||||||||| || ||||||| |||||| | ||| || |||||| |||||||| || |||||| | ||||||||||    
T  8143402 aaaaggggagggatattttgactccaaggagtaactcttttgagttactccaaatcacatcccttcattatgttttaatcta 8143321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 547 - 624
Target Start/End: Complemental strand, 15555093 - 15555016
Alignment:
Q  547 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacg 624  Q
    |||||||||| |||||||||||||||| | |||  | |||||| |||||||| || | |||| |||||||||| ||||    
T  15555093 ggagggatattttaactccaagagtaactcttttaagttactccaaatcacatccctccattttattttaatccaacg 15555016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 8e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 547 - 660
Target Start/End: Original strand, 52362640 - 52362753
Alignment:
Q  547 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 646  Q
    |||||||||| || ||||||||||||||||| ||||| ||||| ||||| | |||||||||  ||||||||||||| ||||| ||||  |||||||| ||    
T  52362640 ggagggatattttgactccaagagtaagtttatagacctactccaaatctccacctttcatcttattttaatctaatggcttaaatgtgagttttaattg 52362739  T
Q  647 ttaatcatgtgacc 660  Q
    ||||||||||||||    
T  52362740 ttaatcatgtgacc 52362753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 547 - 651
Target Start/End: Complemental strand, 16674350 - 16674246
Alignment:
Q  547 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 646  Q
    |||| ||||| || |||| |||||||||||| ||||||||||| |||||   |||||||||  ||||||||||||| ||||| ||||  |||||||| ||    
T  16674350 ggagagatattttgactcaaagagtaagtttatagacttactccaaatctacacctttcatcttattttaatctaatggcttaaatgtgagttttaattg 16674251  T
Q  647 ttaat 651  Q
    |||||    
T  16674250 ttaat 16674246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 572 - 674
Target Start/End: Original strand, 16673555 - 16673658
Alignment:
Q  572 aagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacc-tctttttgga 670  Q
    |||||| ||||||||||| ||||  | |||||||||  ||||||||||||| || || ||||  | |||||| |||||||||||||||| ||||||||||    
T  16673555 aagtttatagacttactcaaaatatccacctttcatcttattttaatctaatggtttaaatgtgaattttaattgttaatcatgtgaccatctttttgga 16673654  T
Q  671 tctc 674  Q
    ||||    
T  16673655 tctc 16673658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 543 - 674
Target Start/End: Original strand, 41516456 - 41516588
Alignment:
Q  543 aaggggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagtttta 642  Q
    |||||||||||||| || |||| |||||||  ||| ||||||||||| ||||| | |||||||||  |||||||||||||  | || ||||  |||||||    
T  41516456 aaggggagggatattttgactctaagagtatatttatagacttactccaaatctccacctttcatcttattttaatctaatagtttaaatgtgagtttta 41516555  T
Q  643 aatgttaatcatgtgacc-tctttttggatctc 674  Q
    | |||||||||||||||| ||||||| ||||||    
T  41516556 attgttaatcatgtgaccatcttttttgatctc 41516588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 547 - 595
Target Start/End: Complemental strand, 8469861 - 8469813
Alignment:
Q  547 ggagggatatattaactccaagagtaagtttttagacttactctaaatc 595  Q
    |||||||||| || ||||||||||||| ||| |||||||||||||||||    
T  8469861 ggagggatattttgactccaagagtaaatttatagacttactctaaatc 8469813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 610 - 673
Target Start/End: Complemental strand, 41517221 - 41517157
Alignment:
Q  610 tattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacc-tctttttggatct 673  Q
    ||||||||||||| ||||| ||||  |||||||| |||||||||||||||| ||||| |||||||    
T  41517221 tattttaatctaatggcttaaatgtgagttttaattgttaatcatgtgaccatctttgtggatct 41517157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 8e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 564 - 706
Target Start/End: Original strand, 14125165 - 14125308
Alignment:
Q  564 ccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacctc- 662  Q
    |||| ||||||||| ||||||||||| ||||| | |||||||||| ||||||||| |||||||||||    ||||||||| ||||||| |||| |||||     
T  14125165 ccaaaagtaagtttatagacttactccaaatcgctacctttcattttattttaatttaacggcttgatcattagttttaattgttaataatgtaacctcc 14125264  T
Q  663 tttttggatctccatccaaataaaaactttctccaattattctc 706  Q
    |||||  |||||  ||   ||||| |||||||||||||||||||    
T  14125265 tttttaaatctcattcttcataaatactttctccaattattctc 14125308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 1006 - 1092
Target Start/End: Complemental strand, 14125439 - 14125355
Alignment:
Q  1006 agtgctttgcaatcgaagttgaaagcaatataatttgtagaatttataatgcaaccttatgataatattcgaagaaaagactgaaaa 1092  Q
    |||||||||||||||| |||||||||||| |||||| ||  ||||||| |||||||| ||||||||||| |||||||||||| ||||    
T  14125439 agtgctttgcaatcgatgttgaaagcaatgtaatttata--atttatagtgcaacctaatgataatatttgaagaaaagactaaaaa 14125355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 792 - 843
Target Start/End: Complemental strand, 14125656 - 14125605
Alignment:
Q  792 aactccattatataagtaactcgcccaattgaatttgtatataccatccata 843  Q
    ||||||||||||||||||||| |||||||||| |||| ||||||||||||||    
T  14125656 aactccattatataagtaacttgcccaattgattttgaatataccatccata 14125605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 543 - 589
Target Start/End: Original strand, 2479292 - 2479338
Alignment:
Q  543 aaggggagggatatattaactccaagagtaagtttttagacttactc 589  Q
    ||||||||||||||||| ||||||||||||||| |||| | ||||||    
T  2479292 aaggggagggatatattgactccaagagtaagtgtttaaagttactc 2479338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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