View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1291_low_10 (Length: 682)
Name: NF1291_low_10
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1291_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 88 - 522
Target Start/End: Complemental strand, 36576888 - 36576455
Alignment:
| Q |
88 |
gacaaaatcatcaatagtataagcaggatccaaatatgctggtataagactcttaataccaaaagcctcagaaatgaaatctggtggaatacggccgttt |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36576888 |
gacaaaatcatcaatagtataagcaggatccaaatatgctggtataagactcttaataccaaaagcctcagaaatgaaatctggtggaatacggccgttt |
36576789 |
T |
|
| Q |
188 |
gaaaatcgtccggtggggcggccaccatcgatgtcacgaccgtaaggtctaaaattgctctttagaaatgttgatatcatattgttgtttccagaatcaa |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36576788 |
gaaaatcgtccggtggggcggccaccatcgatgtcacgaccgtaaggtctaaaattgctctttagaaatgttgatatcatattgttgtttccagaatcaa |
36576689 |
T |
|
| Q |
288 |
cagaggagtcaccaaacacaattactgctggtacataattttcattcttgcaagtcaccatgatcatttgagttatcaatattagccatacgatgcatat |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36576688 |
cagaggagtcaccaaacacaattactgctggtacataattttcattattgcaagtcaccatgatcatttgagttatcaatattagccatacgatgcatat |
36576589 |
T |
|
| Q |
388 |
gttccccataataataagattatgtaattatttggttttaattcttttggagaagttttatatatgtatcgggccagtccaataattttaataaataaat |
487 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |
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| T |
36576588 |
gttccccataataataagattatgtaattatttggttttaattcttttggagaagttttatatatgtatcgggtcagtccaataatttttaaaaataaat |
36576489 |
T |
|
| Q |
488 |
gagagcaaaagcaaaattttaatatatgtagcctc |
522 |
Q |
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| T |
36576488 |
gagagcaaaagcaaaa-tttaatatatgtagcctc |
36576455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 88 - 388
Target Start/End: Complemental strand, 36564259 - 36563959
Alignment:
| Q |
88 |
gacaaaatcatcaatagtataagcaggatccaaatatgctggtataagactcttaataccaaaagcctcagaaatgaaatctggtggaatacggccgttt |
187 |
Q |
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||||||||||||||| ||||||||||||||||| ||||| |||||| | ||||| |||||||| || | ||||| || |||||| |||| ||||| |
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| T |
36564259 |
gacaaaatcatcaatggtataagcaggatccaagtatgccggtatattgcgcttaacgccaaaagcttcggcgatgaagtccggtggagtacgaccgtta |
36564160 |
T |
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| Q |
188 |
gaaaatcgtccggtggggcggccaccatcgatgtcacgaccgtaaggtctaaaattgctctttagaaatgttgatatcatattgttgtttccagaatcaa |
287 |
Q |
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|||| |||||||| ||||||||||| |||| |||||| ||||||||| ||||||||||||| |||| ||| | |||| |||| |||||||||||||| | |
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| T |
36564159 |
caaaaccgtccggtagggcggccaccttcgaagtcacggccgtaaggtttaaaattgctcttgagaagtgtagctatcctattattgtttccagaatcca |
36564060 |
T |
|
| Q |
288 |
cagaggagtcaccaaacacaattactgctggtacataattttcattcttgcaagtcaccatgatcatttgagttatcaatattagccatacgatgcatat |
387 |
Q |
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|||| || |||||||| ||||||||||||||||||| ||||| | ||||||||||||||||||| ||||| ||||||||||||| |||| | |||||||| |
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| T |
36564059 |
cagaagaatcaccaaagacaattactgctggtacatgatttttagtcttgcaagtcaccatgataatttgggttatcaatattaaccatgctatgcatat |
36563960 |
T |
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| Q |
388 |
g |
388 |
Q |
| |
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| |
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| T |
36563959 |
g |
36563959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 594 - 652
Target Start/End: Complemental strand, 36576380 - 36576322
Alignment:
| Q |
594 |
cgttggtatgtatgtggcttttaacgtgtctgagtatacatacaaatattttaatttct |
652 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36576380 |
cgttggtatgtatgtggcttttaacgtgtctgagtatacataaaaatattttaatttct |
36576322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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