View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1291_low_11 (Length: 632)

Name: NF1291_low_11
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1291_low_11
NF1291_low_11
[»] chr3 (5 HSPs)
chr3 (11-481)||(50805569-50806039)
chr3 (11-481)||(50869838-50870308)
chr3 (582-632)||(50806140-50806190)
chr3 (582-632)||(50869687-50869737)
chr3 (582-629)||(44197169-44197216)
[»] chr4 (2 HSPs)
chr4 (166-481)||(13675431-13675746)
chr4 (582-632)||(13675280-13675330)
[»] chr6 (2 HSPs)
chr6 (166-481)||(19964973-19965288)
chr6 (582-632)||(19965389-19965439)
[»] chr7 (1 HSPs)
chr7 (11-169)||(19056461-19056618)
[»] chr8 (2 HSPs)
chr8 (166-268)||(43021186-43021288)
chr8 (14-89)||(40704837-40704913)


Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 11 - 481
Target Start/End: Original strand, 50805569 - 50806039
Alignment:
Q  11 agaatatgtaaaatgagtgtatacattctaataaaattccttttttccctcatctcatgcatcaaaatcactacaataaaatcgccagtaactaacagta 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  50805569 agaatatgtaaaatgagtgtatacattctaataaaattccttttttccctcatctcatgcatcaaaatcactacaataaaatcgccagtaactaacaata 50805668  T
Q  111 attnnnnnnnncaaacaacggaatcgaattgaatgtgaaagccaaaattacctcaagcatttgtgctagcatttttatatggtttcttggtatgccagaa 210  Q
    |||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50805669 attaaaaaaaacaaacaacggaatcgaattgaatgtgaaagccaaaattacctcaagcatttgtgctagcatttttatatggtttcttggtatgctagaa 50805768  T
Q  211 aattggtcccataatgaagttgcaggaggaatggtagtaatgcagaaacgaatataacgttctttactgaagatttttcattcgagtggcattaacctca 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50805769 aattggtcccataatgaagttgcaggaggaatggtagtaatgcagaaacgaatataacgttctttactgaagatttttcattcgagtggcattaacctca 50805868  T
Q  311 tttaagtgactttatcttggtattaaaatcgtgtaattcgctacatgttatgtttggaaaggtttctaagtttcagttattcactgttgtagaaattccc 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50805869 tttaagtgactttatcttggtattaaaatcgtgtaattcgctacatgttatgtttggaaaggtttctaagtttcagttattcactgttgtagaaattccc 50805968  T
Q  411 tttttgtggtgtttttggagaagaaaataatgcataatgaggatcattggtggcagatagatagatggaac 481  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50805969 tttttgtggtgtttttggagaagaaaataatgcataatgaggatcattggtggcagatagatagatggaac 50806039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 11 - 481
Target Start/End: Complemental strand, 50870308 - 50869838
Alignment:
Q  11 agaatatgtaaaatgagtgtatacattctaataaaattccttttttccctcatctcatgcatcaaaatcactacaataaaatcgccagtaactaacagta 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  50870308 agaatatgtaaaatgagtgtatacattctaataaaattccttttttccctcatctcatgcatcaaaatcactacaataaaatcgccagtaactaacaata 50870209  T
Q  111 attnnnnnnnncaaacaacggaatcgaattgaatgtgaaagccaaaattacctcaagcatttgtgctagcatttttatatggtttcttggtatgccagaa 210  Q
    |||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||    
T  50870208 attaaaaaaaacaaacaacggaatcgaattgaatgtgaaagccaaaattacctcaagcatttgtgctagcatttttatatggtttcttggtatacaaaaa 50870109  T
Q  211 aattggtcccataatgaagttgcaggaggaatggtagtaatgcagaaacgaatataacgttctttactgaagatttttcattcgagtggcattaacctca 310  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50870108 aattagtcccataatgaagttgcaggaggaatggtagtaatgcagaaacgaatataacgttctttactgaagatttttcattcgagtggcattaacctca 50870009  T
Q  311 tttaagtgactttatcttggtattaaaatcgtgtaattcgctacatgttatgtttggaaaggtttctaagtttcagttattcactgttgtagaaattccc 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50870008 tttaagtgactttatcttggtattaaaatcgtgtaattcgctacatgttatgtttggaaaggtttctaagtttcagttattcactgttgtagaaattccc 50869909  T
Q  411 tttttgtggtgtttttggagaagaaaataatgcataatgaggatcattggtggcagatagatagatggaac 481  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50869908 tttttgtggtgtttttggagaagaaaataatgcataatgaggatcattggtggcagatagatagatggaac 50869838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 582 - 632
Target Start/End: Original strand, 50806140 - 50806190
Alignment:
Q  582 ctatgaagctattttatttataacagatatggctatttgattttttacggc 632  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50806140 ctatgaagctattttatttataacagatatggctatttgattttttacggc 50806190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 582 - 632
Target Start/End: Complemental strand, 50869737 - 50869687
Alignment:
Q  582 ctatgaagctattttatttataacagatatggctatttgattttttacggc 632  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50869737 ctatgaagctattttatttataacagatatggctatttgattttttacggc 50869687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 582 - 629
Target Start/End: Complemental strand, 44197216 - 44197169
Alignment:
Q  582 ctatgaagctattttatttataacagatatggctatttgattttttac 629  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44197216 ctatgaagctattttatttataacagatatggctatttgattttttac 44197169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 166 - 481
Target Start/End: Complemental strand, 13675746 - 13675431
Alignment:
Q  166 agcatttgtgctagcatttttatatggtttcttggtatgccagaaaattggtcccataatgaagttgcaggaggaatggtagtaatgcagaaacgaatat 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13675746 agcatttgtgctagcatttttatatggtttcttggtatgccagaaaattagtcccataatgaagttgcaggaggaatggtagtaatgcagaaacgaatat 13675647  T
Q  266 aacgttctttactgaagatttttcattcgagtggcattaacctcatttaagtgactttatcttggtattaaaatcgtgtaattcgctacatgttatgttt 365  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13675646 aacgttctttactgaagatttttcattcaagtggcattaacctcatttaagtgactttatcttggtattaaaatcgtgtaattcgctacatgttatgttt 13675547  T
Q  366 ggaaaggtttctaagtttcagttattcactgttgtagaaattccctttttgtggtgtttttggagaagaaaataatgcataatgaggatcattggtggca 465  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13675546 ggaaaggtttctaagtttaagttattcactgttgtagaaattccctttttgtggtgtttttggagaagaaaataatgcataatgaggatcattggtggca 13675447  T
Q  466 gatagatagatggaac 481  Q
    ||||||||||||||||    
T  13675446 gatagatagatggaac 13675431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 582 - 632
Target Start/End: Complemental strand, 13675330 - 13675280
Alignment:
Q  582 ctatgaagctattttatttataacagatatggctatttgattttttacggc 632  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13675330 ctatgaagctattttatttataacagatatggctatttgattttttacggc 13675280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 166 - 481
Target Start/End: Original strand, 19964973 - 19965288
Alignment:
Q  166 agcatttgtgctagcatttttatatggtttcttggtatgccagaaaattggtcccataatgaagttgcaggaggaatggtagtaatgcagaaacgaatat 265  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19964973 agcatttgtgctagcatttttatatggtttcttggtatcccaaaaaattggtcccataatgaagttgcaggaggaatggtagtaatgcagaaacgaatat 19965072  T
Q  266 aacgttctttactgaagatttttcattcgagtggcattaacctcatttaagtgactttatcttggtattaaaatcgtgtaattcgctacatgttatgttt 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19965073 aacgttctttactgaagatttttcattcgagtggcattaacctcatttaagtgactttatcttggtattaaaatcgtgtaattcgctacatgttatgttt 19965172  T
Q  366 ggaaaggtttctaagtttcagttattcactgttgtagaaattccctttttgtggtgtttttggagaagaaaataatgcataatgaggatcattggtggca 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  19965173 ggaaaggtttctaagtttcagttattcactgttgtagaaattccctttttgtggtgattttggagaagcaaataatgcataatgaggatcattggtggca 19965272  T
Q  466 gatagatagatggaac 481  Q
    ||||||||||||||||    
T  19965273 gatagatagatggaac 19965288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 582 - 632
Target Start/End: Original strand, 19965389 - 19965439
Alignment:
Q  582 ctatgaagctattttatttataacagatatggctatttgattttttacggc 632  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19965389 ctatgaagctattttatttataacagatatggctatttgattttttacggc 19965439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 7e-60; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 11 - 169
Target Start/End: Complemental strand, 19056618 - 19056461
Alignment:
Q  11 agaatatgtaaaatgagtgtatacattctaataaaattccttttttccctcatctcatgcatcaaaatcactacaataaaatcgccagtaactaacagta 110  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  19056618 agaatttgtaaaatgagtgtatacattctaataaaattccttttttccctcatctcatgcatcaaaatcaatacaataaaatcgccagtaactaacaata 19056519  T
Q  111 attnnnnnnnncaaacaacggaatcgaattgaatgtgaaagccaaaattacctcaagca 169  Q
    |||        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19056518 att-aaaaaaacaaacaacggaatcgaattgaatgtgaaagccaaaattacctcaagca 19056461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 166 - 268
Target Start/End: Original strand, 43021186 - 43021288
Alignment:
Q  166 agcatttgtgctagcatttttatatggtttcttggtatgccagaaaattggtcccataatgaagttgcaggaggaatggtagtaatgcagaaacgaatat 265  Q
    ||||||| | |||||| |||||||||| |||||||||||||||| | |||||||||||| ||||| |||||||||||||||||| |||||||||||||||    
T  43021186 agcatttttactagcagttttatatggcttcttggtatgccagagatttggtcccataaagaagtcgcaggaggaatggtagtagtgcagaaacgaatat 43021285  T
Q  266 aac 268  Q
    |||    
T  43021286 aac 43021288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 40704913 - 40704837
Alignment:
Q  14 atatgtaaaatgagtgtatacattctaataaaattc-cttttttccctcatctcatgcatcaaaatcactacaataa 89  Q
    |||||||||||||||||||| |||||||||||||||  |||||||| |||||||||| ||  |||||||||||||||    
T  40704913 atatgtaaaatgagtgtatatattctaataaaattcatttttttccttcatctcatgaatagaaatcactacaataa 40704837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University