View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1291_low_12 (Length: 616)
Name: NF1291_low_12
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1291_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 263 - 600
Target Start/End: Original strand, 7109577 - 7109919
Alignment:
| Q |
263 |
agccattgttgattgcaaatggctctatcgagtcatttatattatatgtattaaacatttccaccccttctattcgaccatgtgtaaaaagagcctctag |
362 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
7109577 |
agccattgttgattgcaaatggctctgtcaagtcacttatattatatgtattaaacatttccaccccttctattcgaccatgtgtaaaaagagcctttgg |
7109676 |
T |
|
| Q |
363 |
taggaagatggataagttgattagcctccttccaatcaacaaaatca-----aggatcatccatatttggttcaaagcaaccacacatgtaagagagaca |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7109677 |
taggaagatggataagttgattagcctccttccaatcaacaaaatcaaccataggatcatccatatttggttcaaagcaaccacacatgtaagagagaca |
7109776 |
T |
|
| Q |
458 |
tcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttcgatctccannnnnnnaaatttaaagcctaactttaaa |
557 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||| ||||||||||||||||| |
|
|
| T |
7109777 |
tcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcgtttataaactgttcaatctccatttttttaaatctaaagcctaactttaaa |
7109876 |
T |
|
| Q |
558 |
tttgttcctttttgaggggtttttggcctaatcccctccctcc |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7109877 |
tttgttcctttttgaggggtttttggcctaatcccctccctcc |
7109919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 7109025 - 7109285
Alignment:
| Q |
1 |
taaatcctctttgatgattagaaatgaggttaggcatgattctagctaacctttcagcaatcactttggttataattttaaacttgaagttatctaaagc |
100 |
Q |
| |
|
||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7109025 |
taaattctctttgctgcttagaaatgaggttaggcatgattctagctaacctttcagcaatcactttggttataattttaaacttgaagttatctaaagc |
7109124 |
T |
|
| Q |
101 |
tataggcctatattgctccacacagtcaacaccttgaaacttaggtatgggaataataacattggcattgtagttagggagcatccagtcatctacaaag |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7109125 |
tataggtctatattgctccacacagtcaataccttgaaacttaggtatgggaataataacattggcattgtagttagggagcatccaatcatctacaaag |
7109224 |
T |
|
| Q |
201 |
aaatttaaaaccgcattagttacatcattattcacattgttccaataagtttggaagaaat |
261 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7109225 |
aaatttaaaaccgcattagttacatcagtattcacattgttccaataagtttggaagaaat |
7109285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 422 - 528
Target Start/End: Complemental strand, 7110878 - 7110772
Alignment:
| Q |
422 |
atttggttcaaagcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttcg |
521 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| | ||||||||||| ||| |||||||| |||| | |
|
|
| T |
7110878 |
atttggttcgaagcaaccacacatgtaagagaaacatcacaatttaactcaaaatcttaatgtaatctatttataagtcgcctcgtttataaattgtttg |
7110779 |
T |
|
| Q |
522 |
atctcca |
528 |
Q |
| |
|
| ||||| |
|
|
| T |
7110778 |
acctcca |
7110772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 410 - 520
Target Start/End: Original strand, 9987640 - 9987749
Alignment:
| Q |
410 |
aggatcatccatatttggttcaaagcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcattt |
509 |
Q |
| |
|
|||||| |||| ||||| |||||||||| ||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
9987640 |
aggatcgtccacatttgcttcaaagcaatcacacatgtaagagagacatcac-agttaacccaaaaccttaatgtaatgtgtttataactcgtcttgttt |
9987738 |
T |
|
| Q |
510 |
ataaactgttc |
520 |
Q |
| |
|
||||| ||||| |
|
|
| T |
9987739 |
ataaattgttc |
9987749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 450 - 528
Target Start/End: Original strand, 9986483 - 9986561
Alignment:
| Q |
450 |
gagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttcgatctcca |
528 |
Q |
| |
|
||||||||||| |||||| | |||||| |||||||||||||||||||||||| ||||||||||| |||| || ||||| |
|
|
| T |
9986483 |
gagagacatcataatttatcccaaaactttaatgtaatgtgtttataagtcgcatcatttataaattgtttgacctcca |
9986561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 440 - 522
Target Start/End: Original strand, 9992710 - 9992790
Alignment:
| Q |
440 |
acacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttcga |
522 |
Q |
| |
|
|||||||||| |||||||||| | || |||| ||| ||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
9992710 |
acacatgtaaaagagacatcatagtt-aacttaaa-ccttaatgtaatgtgtttataagtcgtcttgtttataaattgttcga |
9992790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 428 - 511
Target Start/End: Original strand, 9991728 - 9991811
Alignment:
| Q |
428 |
ttcaaagcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttat |
511 |
Q |
| |
|
|||||||||||||||| |||| || ||||||||||||||| |||||| |||||||||| || ||| || ||||||| ||||| |
|
|
| T |
9991728 |
ttcaaagcaaccacaccactaagggatacatcacaatttaacccaaaactttaatgtaatatgcttagaaatcgtctcgtttat |
9991811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 545 - 593
Target Start/End: Complemental strand, 26169962 - 26169914
Alignment:
| Q |
545 |
gcctaactttaaatttgttcctttttgaggggtttttggcctaatcccc |
593 |
Q |
| |
|
||||||||| | |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26169962 |
gcctaacttcagatttgttcctttttgagggggttttggcctaatcccc |
26169914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 520
Target Start/End: Original strand, 29873561 - 29873648
Alignment:
| Q |
433 |
agcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttc |
520 |
Q |
| |
|
|||||||||||| || |||||||| ||||| | | |||||||||||||| | |||| |||||| |||| || || ||||||| ||||| |
|
|
| T |
29873561 |
agcaaccacacaagtgagagagacgtcacactcttactcaaaaccttaaggcaatgagtttatgagtcctcccacttataaaatgttc |
29873648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 520
Target Start/End: Original strand, 15841390 - 15841477
Alignment:
| Q |
433 |
agcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttc |
520 |
Q |
| |
|
|||||||||||| || |||||||||||||| | | || ||||||||||| | ||||||||||| | || ||||| ||| ||| ||||| |
|
|
| T |
15841390 |
agcaaccacacaagtgagagagacatcacactcttacccaaaaccttaaggcaatgtgtttatgaatcctctcacttacaaagtgttc |
15841477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 433 - 481
Target Start/End: Complemental strand, 16524499 - 16524451
Alignment:
| Q |
433 |
agcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaa |
481 |
Q |
| |
|
|||||||||||| |||||||||||| |||| | | |||||||||||||| |
|
|
| T |
16524499 |
agcaaccacacaagtaagagagacaccacactcttactcaaaaccttaa |
16524451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University