View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1291_low_17 (Length: 549)
Name: NF1291_low_17
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1291_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 17 - 520
Target Start/End: Original strand, 14883746 - 14884249
Alignment:
| Q |
17 |
tcgggatcgaaccgttgagtttgcatgaagctaacccaagggtgacaagtttagcaagattgcctaatgaagagggaatttcaccactgagttgattatc |
116 |
Q |
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| T |
14883746 |
tcgggatcgaaccgttgagtttgcatgaagctaacccaagggtgacaagtttaacaagattgcctaatgaagagggaatttcaccactgagttgattatc |
14883845 |
T |
|
| Q |
117 |
accgagtcgcaaaaatcggagattcaccaacgagccaaactcaacaggaatttgactcgtcagttggttggagaacaaaagcaaagattctagtttagta |
216 |
Q |
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| T |
14883846 |
accgagtcgcaaaaatcggagattcactaacgagccaaaatcagcgggaatttgactcgtaagttggttggagaacaaaagcaaagattctagtttagta |
14883945 |
T |
|
| Q |
217 |
agtttggagagagaaggtggaatgggacccacaatatggtttgatgaaagatcaaggtgagttaggttttgtaaaagaccgatagaaggtgaaattgacc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14883946 |
agtttggagagagaaggtggaatgggacccacaatatggtttgatgaaagatcaaggtgagttaggttttgtaaaagaccgataaaaggtgaaattgacc |
14884045 |
T |
|
| Q |
317 |
cagtgagttttgagttagacaaaacgagtctaactatgtcacgactcaccgagtcacatgaaatacctctccaagtacagtaatcagtgttgttttcaga |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14884046 |
cagtgagttttgagttagacaaaacgagtctaactatgtcacgactcaccgagtcacatgaaatacctctccaagtacagtaatcagtgttgttttcaga |
14884145 |
T |
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| Q |
417 |
ccaagtactaagaacattttcagggtcttctgtaaaagatgatttcacctccaaaagcacattcaaagtggttttatcattatcatgacaaaggactaat |
516 |
Q |
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| T |
14884146 |
ccaagtactaagaacattttcagggtcttctgtaaaagatgatttcacctccaaaagcacattcaaagtggttttatcattatcatgacaaaggactaat |
14884245 |
T |
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| Q |
517 |
agaa |
520 |
Q |
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|||| |
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| T |
14884246 |
agaa |
14884249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 302 - 520
Target Start/End: Original strand, 14869841 - 14870059
Alignment:
| Q |
302 |
aaggtgaaattgacccagtgagttttgagttagacaaaacgagtctaactatgtcacgactcaccgagtcacatgaaatacctctccaagtacagtaatc |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14869841 |
aaggtgaaattgacccagtgagttttgagttagacaaaacgagtctaactatgtcacgactcaccgagtcacatgaaatacctctccaagtacagtaatc |
14869940 |
T |
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| Q |
402 |
agtgttgttttcagaccaagtactaagaacattttcagggtcttctgtaaaagatgatttcacctccaaaagcacattcaaagtggttttatcattatca |
501 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14869941 |
ggtgttgttttcagaccaagtactaagaacattttcagggtcttctgtaaaagatgatttcacctccaaaagcacattcaaagtggttttatcattatca |
14870040 |
T |
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| Q |
502 |
tgacaaaggactaatagaa |
520 |
Q |
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||||||||||||||||||| |
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| T |
14870041 |
tgacaaaggactaatagaa |
14870059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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