View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1291_low_20 (Length: 468)
Name: NF1291_low_20
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1291_low_20 |
 | |
|
| [»] scaffold0329 (1 HSPs) |
| | |
|
| [»] scaffold0669 (1 HSPs) |
| | |
|
| [»] scaffold0257 (1 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 432; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 14815494 - 14815945
Alignment:
| Q |
1 |
ctctttatctgatactgatacttctatcccttcctgtcaacctccaatcattgatgatattaccacttcttcttcatcaactttacctcttactcgtcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14815494 |
ctctttatctgatactgatacttctatcccttcctgtcaacctccaatcattgatgatattactacttcttcttcatcaactttacctcttactcctcct |
14815593 |
T |
|
| Q |
101 |
tcttcacctgttccacctattattcccagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaataatcttcaagcttcca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14815594 |
tcttcacctgttccacctattattcccagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaacaatcttcaagcttcca |
14815693 |
T |
|
| Q |
201 |
catatcctatttctcattttctttctcataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacctgagcctaaatcctatgc |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14815694 |
catatcctatttctcattttctttcccataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacctgagcctaaatcctatgc |
14815793 |
T |
|
| Q |
301 |
tgaagcaagtaaacatgagtgttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttaccaccaaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14815794 |
tgaagcaagtaaacatgagtgttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttaccaccaaat |
14815893 |
T |
|
| Q |
401 |
gttaagcctattggatgtagatggatttacaaagtcaaatttcatgatgatg |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14815894 |
gttaagcctattggatgtagatggatttacaaagtcaaatttcatgctgatg |
14815945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 353 - 439
Target Start/End: Complemental strand, 20851302 - 20851216
Alignment:
| Q |
353 |
gctcttgagaaaactggtacttggaaacttgtggatttaccaccaaatgttaagcctattggatgtagatggatttacaaagtcaaa |
439 |
Q |
| |
|
|||||||| || ||||||||||||||||| || ||||||||||| ||||| |||||||| || || ||||||||||||||| ||||| |
|
|
| T |
20851302 |
gctcttgaaaatactggtacttggaaactggtcgatttaccacccaatgtgaagcctatagggtgcagatggatttacaaaatcaaa |
20851216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 394
Target Start/End: Original strand, 14617107 - 14617205
Alignment:
| Q |
296 |
tatgctgaagcaagtaaacatgagtgttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttacca |
394 |
Q |
| |
|
|||| ||||||||| |||||| |||||| |||| ||||||||| ||| ||| ||||||||| || ||||||||||||||||| |||| ||||||| |
|
|
| T |
14617107 |
tatgatgaagcaagcaaacatacttgttggcagcaggctatgcaaactgagcttacagctcttgaaaatactggtacttggaaactggtgggtttacca |
14617205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 378
Target Start/End: Complemental strand, 6568944 - 6568849
Alignment:
| Q |
283 |
tgagcctaaatcctatgctgaagcaagtaaacatgagtgttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaa |
378 |
Q |
| |
|
|||||| ||| | |||||||||||||| |||||||| | ||||| || |||||||||| |||| | || ||||||||||||||||||||||| |
|
|
| T |
6568944 |
tgagcccaaaacatatgctgaagcaagcaaacatgaattttggagacaggctatgcaagatgaattatctgcacttgagaaaactggtacttggaa |
6568849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 402
Target Start/End: Original strand, 26970549 - 26970631
Alignment:
| Q |
320 |
tgttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttaccaccaaatgt |
402 |
Q |
| |
|
||||||||||| | |||||||||||||| || ||||||||| ||| |||||||||||||| |||||||||||||||| |
|
|
| T |
26970549 |
tgttggaagcaaggaatgcaagttgaactgtccgcctttgagaaaattggaacttggaaacttgtatatttaccaccaaatgt |
26970631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 5240036 - 5240487
Alignment:
| Q |
1 |
ctctttatctgatactgatacttctatcccttcctgtcaacctccaatcattgatgatattaccacttcttcttcatcaactttacctcttactcgtcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5240036 |
ctctttatctgatactgatacttctatcccttcctgtcaacctccaatcattgatgatattactacttcttcttcatcaactttacctcttactcctcct |
5240135 |
T |
|
| Q |
101 |
tcttcacctgttccacctattattcccagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaataatcttcaagcttcca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
5240136 |
tcttcacctgttccacctattattcccagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaacaatcttcaagcttcga |
5240235 |
T |
|
| Q |
201 |
catatcctatttctcattttctttctcataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacctgagcctaaatcctatgc |
300 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5240236 |
catatcatatttctcattttctttcccataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacctgagcctaaatcctatgc |
5240335 |
T |
|
| Q |
301 |
tgaagcaagtaaacatgagtgttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttaccaccaaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5240336 |
tgaagcaagtaaacatgagtgttggatgcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttaccaccaaat |
5240435 |
T |
|
| Q |
401 |
gttaagcctattggatgtagatggatttacaaagtcaaatttcatgatgatg |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5240436 |
gttaagcctattggatgtagatggatttacaaagtcaaatttcatgttgatg |
5240487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 10653433 - 10653884
Alignment:
| Q |
1 |
ctctttatctgatactgatacttctatcccttcctgtcaacctccaatcattgatgatattaccacttcttcttcatcaactttacctcttactcgtcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||| |||| |
|
|
| T |
10653433 |
ctctttatctgatactgatacttctatcccttcctgtcaacctccaatcattgatgatattaccacttcctcttcatcaattttacctcatactcctcct |
10653532 |
T |
|
| Q |
101 |
tcttcacctgttccacctattattcccagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaataatcttcaagcttcca |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10653533 |
tcttcacctgttcctcctattattcccagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaacaatcttcaagcttcca |
10653632 |
T |
|
| Q |
201 |
catatcctatttctcattttctttctcataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacctgagcctaaatcctatgc |
300 |
Q |
| |
|
||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10653633 |
catatcccatttctcattttatttcccataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacctaagcctaaatcctatgc |
10653732 |
T |
|
| Q |
301 |
tgaagcaagtaaacatgagtgttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttaccaccaaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10653733 |
tgaagcaagtaaacatgagtgttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttaccaccaaat |
10653832 |
T |
|
| Q |
401 |
gttaagcctattggatgtagatggatttacaaagtcaaatttcatgatgatg |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
10653833 |
gttaagcctattggatgtagatggatttacaaagtcaagtttcatgctgatg |
10653884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 10867578 - 10868029
Alignment:
| Q |
1 |
ctctttatctgatactgatacttctatcccttcctgtcaacctccaatcattgatgatattaccacttcttcttcatcaactttacctcttactcgtcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| |
|
|
| T |
10867578 |
ctctttatctgatactgatacttctatcccttcctgtcaacctccaatcattgatgatattaccacttcttcttcatcaattttacctcatactcctcct |
10867677 |
T |
|
| Q |
101 |
tcttcacctgttccacctattattcccagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaataatcttcaagcttcca |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10867678 |
tcttcacctgttcctcctattattcccagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaacaatcttcaagcttcca |
10867777 |
T |
|
| Q |
201 |
catatcctatttctcattttctttctcataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacctgagcctaaatcctatgc |
300 |
Q |
| |
|
||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10867778 |
catatcccatttctcattttatttcccataataatatttctaacaatcattcttcttttgttatgtctttacattcacaaccttagcctaaatcctatgc |
10867877 |
T |
|
| Q |
301 |
tgaagcaagtaaacatgagtgttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttaccaccaaat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10867878 |
tgaagcaagtaaacatgagtgttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttacctccaaat |
10867977 |
T |
|
| Q |
401 |
gttaagcctattggatgtagatggatttacaaagtcaaatttcatgatgatg |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
10867978 |
gttaagcctattggatgtagatggatttacaaagtcaattttcatgttgatg |
10868029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 194 - 452
Target Start/End: Complemental strand, 23166854 - 23166596
Alignment:
| Q |
194 |
gcttccacatatcctatttctcattttctttctcataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacctgagcctaaat |
293 |
Q |
| |
|
|||| |||||| ||||| |||||| |||||||||| || || | ||||||| || ||| | |||||| |||||| | || | ||||||||||| |||| |
|
|
| T |
23166854 |
gctttcacataccctataactcattctctttctcatcatcatttatctaacagtcgttccttttttgtcatgtctcttcacacccaacctgagccaaaat |
23166755 |
T |
|
| Q |
294 |
cctatgctgaagcaagtaaacatgagtgttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttacc |
393 |
Q |
| |
|
| |||||||| ||||| || | ||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23166754 |
cttatgctgaggcaagcaagcttgattgctggaagcatgctatgcaagttgaacttcaggctcttgagaaaactggtacttggaaacttgtggatttacc |
23166655 |
T |
|
| Q |
394 |
accaaatgttaagcctattggatgtagatggatttacaaagtcaaatttcatgatgatg |
452 |
Q |
| |
|
||||||||| ||||||||||| || ||||||||||| || ||||||||||||| ||||| |
|
|
| T |
23166654 |
accaaatgtgaagcctattggttgcagatggatttataaggtcaaatttcatgctgatg |
23166596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 356 - 439
Target Start/End: Original strand, 22644407 - 22644490
Alignment:
| Q |
356 |
cttgagaaaactggtacttggaaacttgtggatttaccaccaaatgttaagcctattggatgtagatggatttacaaagtcaaa |
439 |
Q |
| |
|
||||||||||||||||||||| | |||| ||||||||| || ||||||| || ||||| ||||||||||| |||||||||||| |
|
|
| T |
22644407 |
cttgagaaaactggtacttgggatattgtagatttaccagcatatgttaaacccattggttgtagatggatctacaaagtcaaa |
22644490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 426
Target Start/End: Original strand, 35088181 - 35088313
Alignment:
| Q |
294 |
cctatgctgaagcaagtaaacatgagtgttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttacc |
393 |
Q |
| |
|
|||||||||| ||||| || ||||| |||||||| || || ||||||||||| | ||||||||||| |||||||| ||| | |||||||||| || |
|
|
| T |
35088181 |
cctatgctgaggcaagcaagcatgaatgttggaaacaagcaatgcaagttgagttattggctcttgagaagactggtacatgggatattgtggatttgcc |
35088280 |
T |
|
| Q |
394 |
accaaatgttaagcctattggatgtagatggat |
426 |
Q |
| |
|
|||| ||| ||| |||||||| || |||||||| |
|
|
| T |
35088281 |
accacatgctaaacctattggttgcagatggat |
35088313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 2360253 - 2360704
Alignment:
| Q |
1 |
ctctttatctgatactgatacttctatcccttcctgtcaacctccaatcattgatgatattaccacttcttcttcatcaactttacctcttactcgtcct |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2360253 |
ctctctatctgatactgatacttctatcccttcttgtcaacctccaatcattgatgatattaccacttcttcttcatcaactttacctcttacctctcct |
2360352 |
T |
|
| Q |
101 |
tcttcacctgttccacctattattcccagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaataatcttcaagcttcca |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
2360353 |
tcttcacctgttccacccattattcccagacattctaccagaaaaaccactactccatcttacctccaagattatatttgtaacaatcttcaaacttcca |
2360452 |
T |
|
| Q |
201 |
catatcctatttctcattttctttctcataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacctgagcctaaatcctatgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2360453 |
catatcctatttctcattttctttctcataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacctgagcctaaatcctatgc |
2360552 |
T |
|
| Q |
301 |
tgaagcaagtaaacatgagtgttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttaccaccaaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2360553 |
tgaagcaagtaaacatgagtgttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttaccaccaaat |
2360652 |
T |
|
| Q |
401 |
gttaagcctattggatgtagatggatttacaaagtcaaatttcatgatgatg |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
2360653 |
gttaagcctattggatgtagatggatttacaaagtcaaattccatgctgatg |
2360704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 137 - 452
Target Start/End: Original strand, 52778506 - 52778821
Alignment:
| Q |
137 |
accagaaacaccactactccatcttacctccaagattatatttgtaataatcttcaagcttccacatatcctatttctcattttctttctcataataata |
236 |
Q |
| |
|
|||||| | ||||||||||| |||||| | ||||||||| ||||||||||| |||| ||||| | |||||||| | ||| |||| ||| | || |
|
|
| T |
52778506 |
accagacaaaccactactccttcttacttacaagattatgtttgtaataatattcatacttccccttatcctataaataattacatttcacatcacaact |
52778605 |
T |
|
| Q |
237 |
tttctaacaatcattcttcttttgttatgtctttacattcacaacc--tgagcctaaatcctatgctgaagcaagtaaacatgagtgttggaagcatgct |
334 |
Q |
| |
|
| ||||||||| | |||||||||||||||||| | || ||| ||| |||||| ||||| |||||||||||||| || ||||| |||||||| || || |
|
|
| T |
52778606 |
tatctaacaattactcttcttttgttatgtctcttca--caccaccactgagccaaaatcatatgctgaagcaagcaagcatgattgttggaaacaagcc |
52778703 |
T |
|
| Q |
335 |
atgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttaccaccaaatgttaagcctattggatgtagatggatttacaaag |
434 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||| ||||||| ||||||||| | ||| | || || |||||||||||||||||||| |||| |
|
|
| T |
52778704 |
atgcaagttgaactgcaagctcttgagaaaactggtacctggcaacttgttgatttaccatccaatatcaaacccattggatgtagatggatttataaag |
52778803 |
T |
|
| Q |
435 |
tcaaatttcatgatgatg |
452 |
Q |
| |
|
| |||| ||||| ||||| |
|
|
| T |
52778804 |
ttaaatatcatgctgatg |
52778821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Original strand, 612705 - 613138
Alignment:
| Q |
19 |
tacttctatcccttcctgtcaacctccaatcattgatgatattaccacttcttcttcatcaactttacctcttactcgtccttcttcacctgttccacct |
118 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||| ||||| |||||| ||||| ||| |||||||||||| |||| |
|
|
| T |
612705 |
tacttctatcccttcttgtcaacttccaatcattgatgatattaccactttctcttcaccaactctacctcctactcttccatcttcacctgttttacct |
612804 |
T |
|
| Q |
119 |
attattcccagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaataatcttcaagcttccacatatcctatttctcatt |
218 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |
|
|
| T |
612805 |
gttattcacagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaacaatattcaagcttccacatatcccatttctcatt |
612904 |
T |
|
| Q |
219 |
ttctttctcataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacctgagcctaaatcctatgctgaagcaagtaaacatga |
318 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
612905 |
ttctttcacataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacctgagcctaaatcctatgctgaagcaagtaaatatga |
613004 |
T |
|
| Q |
319 |
gtgttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttaccaccaaatgttaagcctattggatgt |
418 |
Q |
| |
|
| || ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
613005 |
tttttagaagcatgcaatgcaagttgaacttcaagctcttgagaaaactggcacttggaagcttgtggatataccaccaaatgttaagcccattggatgt |
613104 |
T |
|
| Q |
419 |
agatggatttacaaagtcaaatttcatgatgatg |
452 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| |
|
|
| T |
613105 |
agatggatttacaaagtcaagtttcatgctgatg |
613138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Original strand, 619099 - 619532
Alignment:
| Q |
19 |
tacttctatcccttcctgtcaacctccaatcattgatgatattaccacttcttcttcatcaactttacctcttactcgtccttcttcacctgttccacct |
118 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||| ||||| |||||| ||||| ||| |||||||||||| |||| |
|
|
| T |
619099 |
tacttctatcccttcttgtcaacttccaatcattgatgatattaccactttctcttcaccaactctacctcctactcttccatcttcacctgttttacct |
619198 |
T |
|
| Q |
119 |
attattcccagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaataatcttcaagcttccacatatcctatttctcatt |
218 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |
|
|
| T |
619199 |
gttattcacagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaacaatattcaagcttccacatatcccatttctcatt |
619298 |
T |
|
| Q |
219 |
ttctttctcataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacctgagcctaaatcctatgctgaagcaagtaaacatga |
318 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
619299 |
ttctttcacataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacctgagcctaaatcctatgctgaagcaagtaaatatga |
619398 |
T |
|
| Q |
319 |
gtgttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttaccaccaaatgttaagcctattggatgt |
418 |
Q |
| |
|
| || ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
619399 |
tttttagaagcatgcaatgcaagttgaacttcaagctcttgagaaaactggcacttggaagcttgtggatataccaccaaatgttaagcccattggatgt |
619498 |
T |
|
| Q |
419 |
agatggatttacaaagtcaaatttcatgatgatg |
452 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| |
|
|
| T |
619499 |
agatggatttacaaagtcaagtttcatgctgatg |
619532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 203 - 394
Target Start/End: Complemental strand, 15886786 - 15886595
Alignment:
| Q |
203 |
tatcctatttctcattttctttctcataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacctgagcctaaatcctatgctg |
302 |
Q |
| |
|
||||||||||| ||| | | |||||| | ||| | ||||||| ||||||| |||||| ||||||||||| || || |||| || ||| | ||||||| |
|
|
| T |
15886786 |
tatcctatttccaattatgtgtctcatcaaaatttatctaacactcattctcattttgtcatgtctttacactctcacactgaacccaaaacttatgctg |
15886687 |
T |
|
| Q |
303 |
aagcaagtaaacatgagtgttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttacca |
394 |
Q |
| |
|
| ||||| || ||||| || ||||| || ||||||||||||||||| ||||||||||| ||||||||||||||| |||| ||||||||| |
|
|
| T |
15886686 |
aggcaagcaagcatgattgctggaatcaagctatgcaagttgaactatcagctcttgagacaactggtacttggaagattgttgatttacca |
15886595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 435
Target Start/End: Original strand, 19992039 - 19992164
Alignment:
| Q |
310 |
taaacatgagtgttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttaccaccaaatgttaagcct |
409 |
Q |
| |
|
||||||||| ||||||||||| |||||||||| |||||| |||||| | |||||||||||||| || | || |||||||| |||| | |||||| |
|
|
| T |
19992039 |
taaacatgattgttggaagcaagctatgcaagatgaactgactgctcttcatcaaactggtacttggcaaatagttgatttacctccaacagccaagcct |
19992138 |
T |
|
| Q |
410 |
attggatgtagatggatttacaaagt |
435 |
Q |
| |
|
||||| || |||||||||| |||||| |
|
|
| T |
19992139 |
attgggtgcagatggattttcaaagt |
19992164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 399
Target Start/End: Complemental strand, 18551849 - 18551793
Alignment:
| Q |
343 |
tgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttaccaccaaa |
399 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||| | |||||| ||||| |
|
|
| T |
18551849 |
tgaacttaaagctcttgaacaaactggtacttggaaacttgttggtttacctccaaa |
18551793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 126 - 452
Target Start/End: Original strand, 11824 - 12150
Alignment:
| Q |
126 |
ccagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaataatcttcaagcttccacatatcctatttctcattttctttc |
225 |
Q |
| |
|
||||| |||| |||||| | ||||||||||| |||||| | ||||||||| ||||||||||| |||| ||||| | |||||||| | ||| |||| |
|
|
| T |
11824 |
ccagaaattccaccagacaaaccactactccttcttacttacaagattatgtttgtaataatattcatacttccccttatcctataaataattacatttc |
11923 |
T |
|
| Q |
226 |
tcataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacc--tgagcctaaatcctatgctgaagcaagtaaacatgagtgtt |
323 |
Q |
| |
|
||| | || | ||||||||| | |||||||||||||||||| | || ||| ||| |||||| ||||| |||||||||||||| || ||||| |||| |
|
|
| T |
11924 |
acatcaaaacttatctaacaattactcttcttttgttatgtctcttca--caccaccactgagccaaaatcatatgctgaagcaagcaagcatgattgtt |
12021 |
T |
|
| Q |
324 |
ggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttaccaccaaatgttaagcctattggatgtagatg |
423 |
Q |
| |
|
|||| || || |||||||||||||| ||||||||||||||||||||||| ||| ||||||| ||||||||| | ||| | || || |||||||||||||| |
|
|
| T |
12022 |
ggaaacaagccatgcaagttgaactgcaagctcttgagaaaactggtacctggcaacttgttgatttaccatccaatatcaaacccattggatgtagatg |
12121 |
T |
|
| Q |
424 |
gatttacaaagtcaaatttcatgatgatg |
452 |
Q |
| |
|
|||||| ||||| |||| ||||| ||||| |
|
|
| T |
12122 |
gatttataaagttaaatatcatgctgatg |
12150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 137 - 452
Target Start/End: Original strand, 12286126 - 12286441
Alignment:
| Q |
137 |
accagaaacaccactactccatcttacctccaagattatatttgtaataatcttcaagcttccacatatcctatttctcattttctttctcataataata |
236 |
Q |
| |
|
|||||| | ||||||||||| |||||| | ||||||||| ||||||||||| |||| ||||| | |||||||| | ||| |||| ||| | || |
|
|
| T |
12286126 |
accagacaaaccactactccttcttacttacaagattatgtttgtaataatattcatacttccccttatcctataaataattacatttcacatcacaact |
12286225 |
T |
|
| Q |
237 |
tttctaacaatcattcttcttttgttatgtctttacattcacaacc--tgagcctaaatcctatgctgaagcaagtaaacatgagtgttggaagcatgct |
334 |
Q |
| |
|
| ||||||||| | |||||||||||||||||| | || ||| ||| |||||| ||||| |||||||||||||| || ||||| |||||||| || || |
|
|
| T |
12286226 |
tatctaacaattactcttcttttgttatgtctcttca--caccaccactgagccaaaatcatatgctgaagcaagcaagcatgattgttggaaacaagcc |
12286323 |
T |
|
| Q |
335 |
atgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttaccaccaaatgttaagcctattggatgtagatggatttacaaag |
434 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||| ||||||| ||||||||| | ||| | || || |||||||||||||||||||| |||| |
|
|
| T |
12286324 |
atgcaagttgaactgcaagctcttgagaaaactggtacctggcaacttgttgatttaccatccaatatcaaacccattggatgtagatggatttataaag |
12286423 |
T |
|
| Q |
435 |
tcaaatttcatgatgatg |
452 |
Q |
| |
|
| |||| ||||| ||||| |
|
|
| T |
12286424 |
ttaaatatcatgttgatg |
12286441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 146 - 452
Target Start/End: Complemental strand, 19586156 - 19585850
Alignment:
| Q |
146 |
accactactccatcttacctccaagattatatttgtaataatcttcaagcttccacatatcctatttctcattttctttctcataataatatttctaaca |
245 |
Q |
| |
|
||||||||||| |||||| | ||||||||| ||||||| ||| |||| ||||| |||||||||| | ||| |||| ||| | || | ||||||| |
|
|
| T |
19586156 |
accactactccttcttacttacaagattatgtttgtaagaatattcatacttccccatatcctataaataattacatttcacatcacaacttatctaaca |
19586057 |
T |
|
| Q |
246 |
atcattcttcttttgttatgtctttacattcacaac--ctgagcctaaatcctatgctgaagcaagtaaacatgagtgttggaagcatgctatgcaagtt |
343 |
Q |
| |
|
|| | ||||| |||||| ||||| | || ||| || ||||||| ||||| |||||||||||||| || ||||| | |||||| || || ||||||||| |
|
|
| T |
19586056 |
attactcttcatttgttctgtctcttca--caccaccactgagccaaaatcatatgctgaagcaagcaagcatgatttttggaaacaagccatgcaagtt |
19585959 |
T |
|
| Q |
344 |
gaacttcaagctcttgagaaaactggtacttggaaacttgtggatttaccaccaaatgttaagcctattggatgtagatggatttacaaagtcaaatttc |
443 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||| ||||||||| | ||| | || || |||||||||||||||||||| ||||| |||| || |
|
|
| T |
19585958 |
gaactgcaagctcttgagaaaactggtacctggaaacttgttgatttaccatccaatatcaaacccattggatgtagatggatttataaagttaaatatc |
19585859 |
T |
|
| Q |
444 |
atgatgatg |
452 |
Q |
| |
|
||| ||||| |
|
|
| T |
19585858 |
atgttgatg |
19585850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 446
Target Start/End: Complemental strand, 4645264 - 4645171
Alignment:
| Q |
353 |
gctcttgagaaaactggtacttggaaacttgtggatttaccaccaaatgttaagcctattggatgtagatggatttacaaagtcaaatttcatg |
446 |
Q |
| |
|
|||||||| || ||||| || |||||||| || |||||| ||||||||| ||||||||||| |||| |||||||| |||| |||||| ||||| |
|
|
| T |
4645264 |
gctcttgaaaatactgggacatggaaactagttgatttaataccaaatgtcaagcctattggttgtaaatggattttcaaaatcaaatatcatg |
4645171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 433
Target Start/End: Complemental strand, 5666891 - 5666781
Alignment:
| Q |
322 |
ttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttaccaccaaatgttaagcctattggatgtaga |
421 |
Q |
| |
|
||||||||| || |||||||||||||| | ||||||||||||||| | |||| ||||||||| ||||||||| || |||| || || || ||||| ||| |
|
|
| T |
5666891 |
ttggaagcaagcgatgcaagttgaactgta-gctcttgagaaaactaggacttcgaaacttgtagatttaccatcatatgtgaaacccataggatgcaga |
5666793 |
T |
|
| Q |
422 |
tggatttacaaa |
433 |
Q |
| |
|
||| | |||||| |
|
|
| T |
5666792 |
tgggtgtacaaa |
5666781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 433
Target Start/End: Complemental strand, 5676430 - 5676320
Alignment:
| Q |
322 |
ttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttaccaccaaatgttaagcctattggatgtaga |
421 |
Q |
| |
|
||||||||| || |||||||||||||| | ||||||||||| ||| | |||||||||||||| ||||||||| || |||| || || || ||||| ||| |
|
|
| T |
5676430 |
ttggaagcaagcgatgcaagttgaactgta-gctcttgagaagactaggacttggaaacttgtagatttaccatcatatgtgaaacccataggatgcaga |
5676332 |
T |
|
| Q |
422 |
tggatttacaaa |
433 |
Q |
| |
|
||| | |||||| |
|
|
| T |
5676331 |
tgggtgtacaaa |
5676320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 122 - 452
Target Start/End: Original strand, 29500183 - 29500512
Alignment:
| Q |
122 |
attcccagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaataatcttcaagcttccacatatcctatttctcattttc |
221 |
Q |
| |
|
|||||||||||||| |||||| | ||||| ||||| |||||| | ||||||||||| || |||||| |||| ||||||| |||| ||| ||||| |
|
|
| T |
29500183 |
attcccagacattccaccagacaaaccaccactccttcttacttacaagattatatatgcaataatattcattcttccacgtatcatatacatcattaca |
29500282 |
T |
|
| Q |
222 |
tttctcataataatatttctaacaatcattcttcttttgttatgtctttacattc-acaacctgagcctaaatcctatgctgaagcaagtaaacatgagt |
320 |
Q |
| |
|
|||| ||| | ||| | ||||| | | |||||||||||||||||| | || | || ||| || || ||||| |||| ||| ||||| || ||||| | |
|
|
| T |
29500283 |
tttcacatcacaatttatctaatagttcatcttcttttgttatgtctcttcacactaccacc-gaaccaaaatcatatgttgaggcaagcaagcatgact |
29500381 |
T |
|
| Q |
321 |
gttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttaccaccaaatgttaagcctattggatgtag |
420 |
Q |
| |
|
|||| || || || |||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| ||||| | ||| ||||| |
|
|
| T |
29500382 |
gttgaaaacaagccatgcaagttgaacttcaagctcttgagaaaactggtacctgagaacttgttgatttaccaccaaatgtcaagccca-tggttgtag |
29500480 |
T |
|
| Q |
421 |
atggatttacaaagtcaaatttcatgatgatg |
452 |
Q |
| |
|
|||||| |||||||| ||| ||||| ||||| |
|
|
| T |
29500481 |
atggatgtacaaagtaaaacatcatgttgatg |
29500512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 294 - 452
Target Start/End: Complemental strand, 27035472 - 27035314
Alignment:
| Q |
294 |
cctatgctgaagcaagtaaacatgagtgttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttacc |
393 |
Q |
| |
|
|||||||||| ||||| || ||||| |||||||| || || ||||||||||| | ||||||||||| |||||||| ||| | |||||||||| || |
|
|
| T |
27035472 |
cctatgctgaggcaagcaagcatgaatgttggaaacaagcaatgcaagttgagttattggctcttgagaagactggtacatgggatattgtggattttcc |
27035373 |
T |
|
| Q |
394 |
accaaatgttaagcctattggatgtagatggatttacaaagtcaaatttcatgatgatg |
452 |
Q |
| |
|
|||| ||||||| |||||||| || |||||||| | ||||||||| ||||| ||||| |
|
|
| T |
27035372 |
accacatgttaaacctattggttgcagatggatctttaaagtcaaacatcatgttgatg |
27035314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 340
Target Start/End: Complemental strand, 28155761 - 28155711
Alignment:
| Q |
290 |
aaatcctatgctgaagcaagtaaacatgagtgttggaagcatgctatgcaa |
340 |
Q |
| |
|
|||||||||||||| |||||||||| ||| ||||||||| | ||||||||| |
|
|
| T |
28155761 |
aaatcctatgctgaggcaagtaaacttgattgttggaaggaggctatgcaa |
28155711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 398
Target Start/End: Complemental strand, 9846270 - 9846155
Alignment:
| Q |
283 |
tgagcctaaatcctatgctgaagcaagtaaacatgagtgttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaactt |
382 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| |||| ||||||| || || ||||||| |||||| | ||||||||||| |||||||| |||||| || |
|
|
| T |
9846270 |
tgagcccaaaacctatgctgaagcaagtaaatatgattgttggactcaagccatgcaagctgaactaaatgctcttgagaagactggtacatggaaagtt |
9846171 |
T |
|
| Q |
383 |
gtggatttaccaccaa |
398 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
9846170 |
gttgatttaccaccaa |
9846155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 320 - 439
Target Start/End: Original strand, 23958149 - 23958268
Alignment:
| Q |
320 |
tgttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttaccaccaaatgttaagcctattggatgta |
419 |
Q |
| |
|
||||||||||| |||||||||| ||| || |||||||| || ||||||||||||||| | || ||||||||||||||||| || |||| ||||| | |
|
|
| T |
23958149 |
tgttggaagcaagctatgcaagctgagattattgctcttgaaaatactggtacttggaaaatggttgatttaccaccaaatgtgaaacctaaaggatgca |
23958248 |
T |
|
| Q |
420 |
gatggatttacaaagtcaaa |
439 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
23958249 |
gatggatttacaaaatcaaa |
23958268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 26466088 - 26465952
Alignment:
| Q |
296 |
tatgctgaagcaagtaaacatgagtgttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttaccac |
395 |
Q |
| |
|
|||||||| ||||| ||| ||| ||||||||||| ||||||||||||||||| ||||||||||| ||||| || |||||||| || ||| | |||| |
|
|
| T |
26466088 |
tatgctgaggcaagcaaatttgattgttggaagcaagctatgcaagttgaactgtctgctcttgagaatactggaacctggaaactggttgatctgccac |
26465989 |
T |
|
| Q |
396 |
caaatgttaagcctattggatgtagatggatttacaa |
432 |
Q |
| |
|
| ||||| || ||||| | || |||||||| ||||| |
|
|
| T |
26465988 |
ctaatgtcaaacctatagtttgcagatggatatacaa |
26465952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 373 - 452
Target Start/End: Complemental strand, 26663920 - 26663841
Alignment:
| Q |
373 |
ttggaaacttgtggatttaccaccaaatgttaagcctattggatgtagatggatttacaaagtcaaatttcatgatgatg |
452 |
Q |
| |
|
|||||||||||| || |||||||||||||| ||| ||||| | ||||||||||||||||| |||| ||||||||||| |
|
|
| T |
26663920 |
ttggaaacttgttgagttaccaccaaatgtgaagtctattagttgtagatggatttacaagatcaagcatcatgatgatg |
26663841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 373 - 452
Target Start/End: Complemental strand, 26935515 - 26935436
Alignment:
| Q |
373 |
ttggaaacttgtggatttaccaccaaatgttaagcctattggatgtagatggatttacaaagtcaaatttcatgatgatg |
452 |
Q |
| |
|
|||||||||||| || |||||||||||||| ||| ||||| | ||||||||||||||||| |||| ||||||||||| |
|
|
| T |
26935515 |
ttggaaacttgttgagttaccaccaaatgtgaagtctattagttgtagatggatttacaagatcaagcatcatgatgatg |
26935436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 402
Target Start/End: Complemental strand, 20323422 - 20323268
Alignment:
| Q |
248 |
cattcttcttttgttatgtctttacattcacaacctgagcctaaatcctatgctgaagcaagtaaacatgagtgttggaagcatgctatgcaagttgaac |
347 |
Q |
| |
|
|||||||||| |||| |||| |||||| | || |||||||||| |||||||||| || | |||||||| || ||| || | || ||||||||||| |
|
|
| T |
20323422 |
cattcttcttatgttttgtccttacatactcacaatgagcctaaaacctatgctgaggccaacaaacatgaatgctggcagaaagcgatgcaagttgagt |
20323323 |
T |
|
| Q |
348 |
ttcaagctcttgagaaaactggtacttggaaacttgtggatttaccaccaaatgt |
402 |
Q |
| |
|
| ||||||||||| ||||||| |||||||| |||| |||||||| || ||||| |
|
|
| T |
20323322 |
tacaagctcttgaacaaactgggacttggaattttgtagatttaccccctaatgt |
20323268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0669 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0669
Description:
Target: scaffold0669; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 122 - 309
Target Start/End: Original strand, 2675 - 2857
Alignment:
| Q |
122 |
attcccagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaataatcttcaagcttccacatatcctatttctcattttc |
221 |
Q |
| |
|
||||| |||||||| || ||| | ||||||||||| |||||| | || ||||| || || |||||| || | || |||||||||||||| ||||| | |
|
|
| T |
2675 |
attcctagacattccactagacaaaccactactccttcttacttacaggattacatctgcaataatatttatgcatccacatatcctatccatcattata |
2774 |
T |
|
| Q |
222 |
tttctcataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacctgagcctaaatcctatgctgaagcaag |
309 |
Q |
| |
|
|||||||| | ||| | ||||||||||||||||||||||||||||| ||| |||| ||||||| ||||| |||||||||||||| |
|
|
| T |
2775 |
tttctcatcacaatttatctaacaatcattcttcttttgttatgtc---aca--cacatactgagccaaaatcatatgctgaagcaag |
2857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 320 - 446
Target Start/End: Original strand, 19665602 - 19665728
Alignment:
| Q |
320 |
tgttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttaccaccaaatgttaagcctattggatgta |
419 |
Q |
| |
|
|||||| |||| ||||||||| ||||||| ||||||||| || ||||||||||||||||| |||||||||||||| || | || ||||| ||||| | |
|
|
| T |
19665602 |
tgttggcagcaggctatgcaaactgaacttacagctcttgaaaatactggtacttggaaactggtggatttaccacctaacatcaaacctataggatgca |
19665701 |
T |
|
| Q |
420 |
gatggatttacaaagtcaaatttcatg |
446 |
Q |
| |
|
| ||||| || ||| |||||| ||||| |
|
|
| T |
19665702 |
ggtggatatataaaatcaaatatcatg |
19665728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 295 - 393
Target Start/End: Complemental strand, 3819529 - 3819431
Alignment:
| Q |
295 |
ctatgctgaagcaagtaaacatgagtgttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttacc |
393 |
Q |
| |
|
|||||||||||||| ||| ||| |||||||| || || ||||| ||||||||| | |||||||||||||| | |||||||||||||| |||||||| |
|
|
| T |
3819529 |
ctatgctgaagcaaacaaatttgattgttggaaccaagcaatgcaggttgaacttacaactcttgagaaaactcgcacttggaaacttgttgatttacc |
3819431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 429
Target Start/End: Original strand, 8853323 - 8853399
Alignment:
| Q |
353 |
gctcttgagaaaactggtacttggaaacttgtggatttaccaccaaatgttaagcctattggatgtagatggattta |
429 |
Q |
| |
|
|||||||| || | ||| || |||||||| || ||||||| |||||| || ||||||||||| |||| ||||||||| |
|
|
| T |
8853323 |
gctcttgaaaatattgggacatggaaactggttgatttactaccaaacgtaaagcctattggttgtaaatggattta |
8853399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 396
Target Start/End: Original strand, 7666 - 7742
Alignment:
| Q |
320 |
tgttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgtggatttaccacc |
396 |
Q |
| |
|
|||||| |||| ||||||||| ||||||| ||||||||| || ||||||||||||||||| |||||||||||||| |
|
|
| T |
7666 |
tgttggcagcaggctatgcaaactgaacttacagctcttgaaaatactggtacttggaaactggtggatttaccacc |
7742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 452
Target Start/End: Complemental strand, 169275 - 169185
Alignment:
| Q |
362 |
aaaactggtacttggaaacttgtggatttaccaccaaatgttaagcctattggatgtagatggatttacaaagtcaaatttcatgatgatg |
452 |
Q |
| |
|
|||||||||||||||| | || | |||||||||||| ||| || |||||||| ||||| |||||||||||||| ||| ||||| ||||| |
|
|
| T |
169275 |
aaaactggtacttggacaattattaatttaccaccaactgtcaaacctattggctgtaggtggatttacaaagtgaaacatcatgctgatg |
169185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University