View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1291_low_21 (Length: 466)
Name: NF1291_low_21
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1291_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 87 - 458
Target Start/End: Complemental strand, 4178012 - 4177641
Alignment:
| Q |
87 |
atttatatcatgcaggagacactaccttgaatttcctcctgaagtaaactttaagaagctgttgcaatctaataagcacttattagagttgagccaaaga |
186 |
Q |
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| T |
4178012 |
atttatatcatgcaggagacactaccttgaatttcctcctaaagtaaactttaagaagctgttgcaatctaataagcacttattagagttgagccaaaga |
4177913 |
T |
|
| Q |
187 |
ccttttccaagtttggattcttcattttttggtataccattaattacaccaccatctctgatatattcaactcctccagtatcagtcaataatcatttcc |
286 |
Q |
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| T |
4177912 |
ccttttccaagtttggattcttcattttttggtataccattaattacaccaccatctctgatatattcaactcctccagtatcagtcaataatcatttcc |
4177813 |
T |
|
| Q |
287 |
ataatccttgccctaattttttgtcagctcccaacacttgttagaattaatcaatgagcagtgacataaatgttttagacaccttgtttagcaagtgttg |
386 |
Q |
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| T |
4177812 |
ataatccttgccctaattttttgtcagctcccaacacttgttagaattaatcaatgagcagtgacataaatgttttagacaccttgtttagcaagtgttg |
4177713 |
T |
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| Q |
387 |
tagacaaaaatattgtatcaaattatgtaatattatgtctgggttttggaatttttgtgtgtatttcatctc |
458 |
Q |
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| T |
4177712 |
tagacaaaaatattgtatcaaattatgtaatattatgtctgggttttggaatttttgtgtctatttcttctc |
4177641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 95 - 452
Target Start/End: Original strand, 4078045 - 4078409
Alignment:
| Q |
95 |
catgcaggagacactaccttgaatttcctcctgaagtaaactttaagaagctgttgcaatctaataagcacttattagagttgagccaaagaccttttcc |
194 |
Q |
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| T |
4078045 |
catgcaggagacactatcttgaatttcctcctggagtaaactttaagaagctgttgcaatctaataagcacttattagagttgagccaaagaccttttcc |
4078144 |
T |
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| Q |
195 |
aagtttggattcttcattttttggtataccattaattacaccaccatctctgatatattcaactcctccag----tatcagtcaataatcatttccataa |
290 |
Q |
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| T |
4078145 |
aagtttggattcttcattttttggtataccattaattacaccaccatctctgatatattcaactcctccagtatatatcagtcaataatcatttccataa |
4078244 |
T |
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| Q |
291 |
tccttgccctaattttttgtcagctcccaacacttgttagaattaatcaatgagcagtgacataaatgttttagacaccttgtttagcaagtgttgtaga |
390 |
Q |
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| T |
4078245 |
tccttgccctaattttttgtcagctcccaacacttgttacaattaatcaataagcagtgacagaaatgttttagacaccttgtttacctagtgttgtaga |
4078344 |
T |
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| Q |
391 |
caaaaatattgtatcaaatt-atgtaatatta--tgtctgggttttggaatttttgtgtgtattt |
452 |
Q |
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| T |
4078345 |
cagaaatattgtatcaaattgatgtaatattatttgtttgggttttggaatttttgtgtgtattt |
4078409 |
T |
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