View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1291_low_22 (Length: 450)

Name: NF1291_low_22
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1291_low_22
NF1291_low_22
[»] chr2 (1 HSPs)
chr2 (64-335)||(9670702-9670975)
[»] chr7 (15 HSPs)
chr7 (322-444)||(22885617-22885739)
chr7 (325-444)||(22831054-22831173)
chr7 (325-444)||(22889315-22889434)
chr7 (322-444)||(22815050-22815172)
chr7 (322-444)||(22809667-22809789)
chr7 (325-444)||(22840075-22840194)
chr7 (334-444)||(22893967-22894077)
chr7 (325-444)||(22858485-22858604)
chr7 (322-441)||(22898289-22898408)
chr7 (322-440)||(22875943-22876061)
chr7 (340-420)||(22922209-22922289)
chr7 (322-437)||(22805339-22805454)
chr7 (325-400)||(22880631-22880706)
chr7 (340-424)||(22933302-22933386)
chr7 (392-437)||(22913698-22913743)
[»] chr1 (1 HSPs)
chr1 (322-441)||(21150569-21150688)
[»] chr3 (1 HSPs)
chr3 (119-167)||(50510834-50510882)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 64 - 335
Target Start/End: Original strand, 9670702 - 9670975
Alignment:
Q  64 cacagaccacaccaattaggctaactcatagcaaccaaactaagnnnnnnnnnn--ttacaccaatcaagatactagcacacttctactattgtctgcaa 161  Q
    |||||||||||||||||||||||||||||||||||||| |||||            ||||||||||||||||||||||||||||||||||||||||||||    
T  9670702 cacagaccacaccaattaggctaactcatagcaaccaagctaagaaaaataaaaaattacaccaatcaagatactagcacacttctactattgtctgcaa 9670801  T
Q  162 caaagctacatgtgactctctttttcttagaggaaaatataagtgactctcttaaacaaatggtttttctcgaccttctgtcttccctcttctttggggt 261  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9670802 caaagctacatgtgactttctttttcttagaggaaaatataagtgactctcttaaacaaatggtttttctcgaccttctgtcttccctcttctttagggt 9670901  T
Q  262 gtcctcctcctatgttttaaacatttaggccacatcacatatgtctgaagaagctacgtgcaatggaaacagta 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  9670902 gtcctcctcctatgttttaaacatttaggccacatcacatatgtctgaagaagctacgtgcaagggaaatagta 9670975  T

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Target: chr7 (Bit Score: 115; Significance: 3e-58; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 322 - 444
Target Start/End: Complemental strand, 22885739 - 22885617
Alignment:
Q  322 caatggaaacagtagcagccatgtttttggtgttgagcttgacactgatcaaaattttgagtttggtgaaatcaatgataaccatattggtattgatatc 421  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22885739 caatggaaacagtagcagccatgtttttggtattgagcttgacactgatcaaaattttgagtttgatgaaatcaatgataaccatattggtattgatatc 22885640  T
Q  422 aatgatttgaaatcagctaattc 444  Q
    |||||||||||||||||||||||    
T  22885639 aatgatttgaaatcagctaattc 22885617  T

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Target: chr7; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 325 - 444
Target Start/End: Complemental strand, 22831173 - 22831054
Alignment:
Q  325 tggaaacagtagcagccatgtttttggtgttgagcttgacactgatcaaaattttgagtttggtgaaatcaatgataaccatattggtattgatatcaat 424  Q
    |||||||||||||| ||||||||||||||||||||||||||||  | ||||||||||||||| ||| ||||||||||| ||| |||| ||||||||||||    
T  22831173 tggaaacagtagcaaccatgtttttggtgttgagcttgacactcgtaaaaattttgagtttgatgatatcaatgataatcatgttggaattgatatcaat 22831074  T
Q  425 gatttgaaatcagctaattc 444  Q
    ||||||||||||||||||||    
T  22831073 gatttgaaatcagctaattc 22831054  T

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Target: chr7; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 325 - 444
Target Start/End: Complemental strand, 22889434 - 22889315
Alignment:
Q  325 tggaaacagtagcagccatgtttttggtgttgagcttgacactgatcaaaattttgagtttggtgaaatcaatgataaccatattggtattgatatcaat 424  Q
    |||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||| ||| ||||| ||||||||| |||| ||||||||||||    
T  22889434 tggaaacagtagcaaccatgtttttggtgttgagcttgacactcgtcaaaattttgagtttgatgatatcaacgataaccatgttggaattgatatcaat 22889335  T
Q  425 gatttgaaatcagctaattc 444  Q
    ||||||||||||||| ||||    
T  22889334 gatttgaaatcagctgattc 22889315  T

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Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 322 - 444
Target Start/End: Complemental strand, 22815172 - 22815050
Alignment:
Q  322 caatggaaacagtagcagccatgtttttggtgttgagcttgacactgatcaaaattttgagtttggtgaaatcaatgataaccatattggtattgatatc 421  Q
    |||||||||||||| || ||||||||||||||||||||||||||||  |||| ||||  |||||| ||| ||||||||||||||| ||||||| ||||||    
T  22815172 caatggaaacagtaacaaccatgtttttggtgttgagcttgacactcgtcaagatttgcagtttgatgatatcaatgataaccatgttggtatcgatatc 22815073  T
Q  422 aatgatttgaaatcagctaattc 444  Q
    ||| |||||||||||||||||||    
T  22815072 aattatttgaaatcagctaattc 22815050  T

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Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 322 - 444
Target Start/End: Complemental strand, 22809789 - 22809667
Alignment:
Q  322 caatggaaacagtagcagccatgtttttggtgttgagcttgacactgatcaaaattttgagtttggtgaaatcaatgataaccatattggtattgatatc 421  Q
    ||||||||||||||| | ||||||||| |||||||| || || |||  || || |  |||||||| ||| ||||||||||||||||||||||||||||||    
T  22809789 caatggaaacagtagtaaccatgttttcggtgttgaactagatactcttctaagtagtgagtttgatgatatcaatgataaccatattggtattgatatc 22809690  T
Q  422 aatgatttgaaatcagctaattc 444  Q
    |||||||||||||||||||||||    
T  22809689 aatgatttgaaatcagctaattc 22809667  T

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Target: chr7; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 325 - 444
Target Start/End: Complemental strand, 22840194 - 22840075
Alignment:
Q  325 tggaaacagtagcagccatgtttttggtgttgagcttgacactgatcaaaattttgagtttggtgaaatcaatgataaccatattggtattgatatcaat 424  Q
    ||||||| || ||| |||||||||||||||||| ||||| |||  || || |  |||||||| ||| ||||||||||||||| |||||||||||||||||    
T  22840194 tggaaacggtggcaaccatgtttttggtgttgaacttgatactcttctaagtagtgagtttgatgatatcaatgataaccatgttggtattgatatcaat 22840095  T
Q  425 gatttgaaatcagctaattc 444  Q
    ||||||||||||||||||||    
T  22840094 gatttgaaatcagctaattc 22840075  T

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Target: chr7; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 334 - 444
Target Start/End: Complemental strand, 22894077 - 22893967
Alignment:
Q  334 tagcagccatgtttttggtgttgagcttgacactgatcaaaattttgagtttggtgaaatcaatgataaccatattggtattgatatcaatgatttgaaa 433  Q
    ||||| ||| |||||||||||||| ||||| |||  | |||||  |||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||    
T  22894077 tagcaaccacgtttttggtgttgaacttgatactattgaaaatcgtgagtttgatgatatcaatgataaccatgttggtattgatatcaatgatttgaaa 22893978  T
Q  434 tcagctaattc 444  Q
    |||||||||||    
T  22893977 tcagctaattc 22893967  T

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Target: chr7; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 325 - 444
Target Start/End: Complemental strand, 22858604 - 22858485
Alignment:
Q  325 tggaaacagtagcagccatgtttttggtgttgagcttgacactgatcaaaattttgagtttggtgaaatcaatgataaccatattggtattgatatcaat 424  Q
    |||||||| ||||| |||||| |||| ||||||||||||||||  |||| || ||||||||| ||| |||||| ||||||||  ||||||||| ||||||    
T  22858604 tggaaacactagcaaccatgtgtttgctgttgagcttgacactattcaagatcttgagtttgatgatatcaataataaccatgctggtattgacatcaat 22858505  T
Q  425 gatttgaaatcagctaattc 444  Q
     |||||||||||||||||||    
T  22858504 aatttgaaatcagctaattc 22858485  T

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Target: chr7; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 322 - 441
Target Start/End: Complemental strand, 22898408 - 22898289
Alignment:
Q  322 caatggaaacagtagcagccatgtttttggtgttgagcttgacactgatcaaaattttgagtttggtgaaatcaatgataaccatattggtattgatatc 421  Q
    ||||||||| ||||||| |||||||||||||||||| ||||| |||  |   | |  |||||||  ||| ||||||||||||||| ||||||||||||||    
T  22898408 caatggaaatagtagcaaccatgtttttggtgttgaacttgatactattattagtagtgagtttaatgatatcaatgataaccatgttggtattgatatc 22898309  T
Q  422 aatgatttgaaatcagctaa 441  Q
    ||||||||||||||||||||    
T  22898308 aatgatttgaaatcagctaa 22898289  T

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Target: chr7; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 322 - 440
Target Start/End: Complemental strand, 22876061 - 22875943
Alignment:
Q  322 caatggaaacagtagcagccatgtttttggtgttgagcttgacactgatcaaaattttgagtttggtgaaatcaatgataaccatattggtattgatatc 421  Q
    ||||||||||||||||| |||||||||||||||||| |||||  ||| |   | |  |||||||  ||| ||| ||||||||||| |||| |||||||||    
T  22876061 caatggaaacagtagcaaccatgtttttggtgttgaacttgattctgttttgactaatgagtttaatgatatcgatgataaccatgttggaattgatatc 22875962  T
Q  422 aatgatttgaaatcagcta 440  Q
    |||||||||||||||||||    
T  22875961 aatgatttgaaatcagcta 22875943  T

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Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 420
Target Start/End: Complemental strand, 22922289 - 22922209
Alignment:
Q  340 ccatgtttttggtgttgagcttgacactgatcaaaattttgagtttggtgaaatcaatgataaccatattggtattgatat 420  Q
    |||| |||||| ||||||| ||||||||| |||| |||||||||||||||| || |||||||||||| ||||||| |||||    
T  22922289 ccatctttttgctgttgagtttgacactgttcaagattttgagtttggtgatattaatgataaccatgttggtatagatat 22922209  T

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Target: chr7; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 322 - 437
Target Start/End: Complemental strand, 22805454 - 22805339
Alignment:
Q  322 caatggaaacagtagcagccatgtttttggtgttgagcttgacactgatcaaaattttgagtttggtgaaatcaatgataaccatattggtattgatatc 421  Q
    ||||||||||||| ||| |||||||||||||||||| |||||||||  | || ||||||||||||||||  |  |  |||||||   ||||||| |||||    
T  22805454 caatggaaacagtggcaaccatgtttttggtgttgaacttgacacttctaaagattttgagtttggtgatgttgacaataaccacgatggtattaatatc 22805355  T
Q  422 aatgatttgaaatcag 437  Q
    |||||| |||||||||    
T  22805354 aatgatctgaaatcag 22805339  T

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Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 400
Target Start/End: Complemental strand, 22880706 - 22880631
Alignment:
Q  325 tggaaacagtagcagccatgtttttggtgttgagcttgacactgatcaaaattttgagtttggtgaaatcaatgat 400  Q
    |||||||| ||||| ||||||||||| ||||||| ||||||||| |||| ||||||||||||  || |||||||||    
T  22880706 tggaaacattagcaaccatgtttttgctgttgagtttgacactgttcaagattttgagtttgacgatatcaatgat 22880631  T

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Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 424
Target Start/End: Original strand, 22933302 - 22933386
Alignment:
Q  340 ccatgtttttggtgttgagcttgacactgatcaaaattttgagtttggtgaaatcaatgataaccatattggtattgatatcaat 424  Q
    |||| |||||| ||| ||| ||||||||| |||| | |||||||||| ||| || |||||||||||| ||||||| || ||||||    
T  22933302 ccatatttttgctgtcgagtttgacactgctcaagactttgagtttgatgatattaatgataaccatgttggtatagacatcaat 22933386  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 437
Target Start/End: Complemental strand, 22913743 - 22913698
Alignment:
Q  392 atcaatgataaccatattggtattgatatcaatgatttgaaatcag 437  Q
    |||||||| |||||| |||| ||||||||||||| |||||||||||    
T  22913743 atcaatgacaaccatgttggaattgatatcaatggtttgaaatcag 22913698  T

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Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 322 - 441
Target Start/End: Original strand, 21150569 - 21150688
Alignment:
Q  322 caatggaaacagtagcagccatgtttttggtgttgagcttgacactgatcaaaattttgagtttggtgaaatcaatgataaccatattggtattgatatc 421  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||| ||| |||||| |||||||| ||||||||||||||    
T  21150569 caatggaaacagtagcaaccatgtttttggtgttgagcttgacactgttcaagattttgagtttgatgatatcaataataaccatgttggtattgatatc 21150668  T
Q  422 aatgatttgaaatcagctaa 441  Q
    ||||||||||||||||||||    
T  21150669 aatgatttgaaatcagctaa 21150688  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 50510834 - 50510882
Alignment:
Q  119 tacaccaatcaagatactagcacacttctactattgtctgcaacaaagc 167  Q
    ||||||||| ||||||||||||||||| |||||||||  ||||||||||    
T  50510834 tacaccaatgaagatactagcacacttatactattgttggcaacaaagc 50510882  T

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