View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1291_low_23 (Length: 448)

Name: NF1291_low_23
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1291_low_23
NF1291_low_23
[»] chr1 (3 HSPs)
chr1 (136-274)||(47907395-47907533)
chr1 (30-111)||(47907295-47907376)
chr1 (290-351)||(47907565-47907626)


Alignment Details
Target: chr1 (Bit Score: 118; Significance: 5e-60; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 136 - 274
Target Start/End: Original strand, 47907395 - 47907533
Alignment:
Q  136 gtatactaaccatgaaatattatttgcaatgaaacgaattagttttccttggttaagnnnnnnngaagagaaaattaacccttatggcaccaaaaacata 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  47907395 gtatactaaccatgaaatattatttgcaatgaaacgaattagttttccttggttaagaaaaaaagaagagaaaattaacccttatggcaccaaaaacata 47907494  T
Q  236 tatgtatttattgattaataagtacacatgttttattca 274  Q
    |||||||||||||||||||||||||||||||||||||||    
T  47907495 tatgtatttattgattaataagtacacatgttttattca 47907533  T

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Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 47907295 - 47907376
Alignment:
Q  30 ggaagtgtttcggtgttttggagacaaggtttggataaggtcatattcaaaatgtattgtaaatagcattgtatttaaagtt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47907295 ggaagtgtttcggtgttttggagacaaggtttggataaggtcatattcaaaatgtattgtaaatagcattgtatttaaagtt 47907376  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 290 - 351
Target Start/End: Original strand, 47907565 - 47907626
Alignment:
Q  290 agtttatgatcaacaagaaggggattgactagaatggaagggttgaggtcttgaggtctgtg 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47907565 agtttatgatcaacaagaaggggattgactagaatggaagggttgaggtcttgaggtctgtg 47907626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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