View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1291_low_26 (Length: 410)
Name: NF1291_low_26
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1291_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 12 - 381
Target Start/End: Complemental strand, 10003738 - 10003371
Alignment:
| Q |
12 |
aattcttgtctggttgcaactgtgttatcctcattgaatccttttgttgttccaccatcaccaacaaagtgcttagcacaagctgcaactttcttgctgt |
111 |
Q |
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| T |
10003738 |
aattcatgtctggttgcaactgtgttatcctcattgattccttctgttgttccaccatcaccaacaaagtgcttagcacaagctgcaactttcttgctgt |
10003639 |
T |
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| Q |
112 |
acaaggaaatgacaacaaaatcagttttaagttcaagtatgaatagaatgattttgtaagaaggatgcaaagttgaatttataatcaaagtaagttctga |
211 |
Q |
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| T |
10003638 |
acaaggaaatgacaagaaaatcagttttaagttcaagtatgaatagaatgattttgtaagaaggatgcaaagttgaatttataatcaaagtaagttctga |
10003539 |
T |
|
| Q |
212 |
aagtcaataaaagtaattgatgaaggcaagataaacataatagtgtaacatagacaaatgattgtatacgnnnnnnnnnnntccaaaattaacaattaaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
10003538 |
aagtcaataaaagtaattgatgaaggcaagataaacataatagtgtaacatagacaaatgattgtatacg--aaaaaaaaattcaaaattaacaattaaa |
10003441 |
T |
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| Q |
312 |
tgcaggactattcgtgtttcggtttaggaaggaaaccgaactgttatataggaaacacggatatataaag |
381 |
Q |
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| T |
10003440 |
tgcaggactattcgtgtttcggtttaggaaggaaaccaaactgttatataggaaacacgcatatataaag |
10003371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 12 - 134
Target Start/End: Complemental strand, 9998035 - 9997913
Alignment:
| Q |
12 |
aattcttgtctggttgcaactgtgttatcctcattgaatccttttgttgttccaccatcaccaacaaagtgcttagcacaagctgcaactttcttgctgt |
111 |
Q |
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| T |
9998035 |
aattcatgtctgtttgcaactgtgttatcctcattgattccttttgttgttccaccatcaccgacaaagtgcttagcacaagctgcaactttcttgctgt |
9997936 |
T |
|
| Q |
112 |
acaaggaaatgacaacaaaatca |
134 |
Q |
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| T |
9997935 |
acaagaaaatgagaacaaaatca |
9997913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 9990863 - 9990765
Alignment:
| Q |
12 |
aattcttgtctggttgcaactgtgttatcctcattgaatccttttgttgttccaccatcaccaacaaagtgcttagcacaagctgcaactttcttgctg |
110 |
Q |
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||||| ||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9990863 |
aattcatgtctggttgcgactgtgttattctcattgattccttttgttgttccaccatcaccaacaaagtgcttagcacaagctgcaactttcttgctg |
9990765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 10012388 - 10012286
Alignment:
| Q |
18 |
tgtctggttgcaactgtgttatcctcattgaatccttttgttgttccaccatcaccaacaaagtgcttagcacaagctgcaactttcttgctgtacaagg |
117 |
Q |
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|||||| ||||||||||||||| |||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10012388 |
tgtctgtttgcaactgtgttattctcattgattccttttgtcgttccaccatcaccgacaaagtgcttagcacaagctgcaactttcttgctgcgcaagg |
10012289 |
T |
|
| Q |
118 |
aaa |
120 |
Q |
| |
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||| |
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| T |
10012288 |
aaa |
10012286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 11246349 - 11246386
Alignment:
| Q |
57 |
gttgttccaccatcaccaacaaagtgcttagcacaagc |
94 |
Q |
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| T |
11246349 |
gttgtaccaccatctccaacaaagtgcttagcacaagc |
11246386 |
T |
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