View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1291_low_28 (Length: 402)
Name: NF1291_low_28
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1291_low_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 61 - 393
Target Start/End: Original strand, 41593941 - 41594273
Alignment:
| Q |
61 |
aactgcaatgttttcatatttttgttgttatgcacatcttgaggaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagca |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41593941 |
aactgcaatgttttcatatttttgttgttatgcacatcttgagcaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagca |
41594040 |
T |
|
| Q |
161 |
atgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtatcaatgtttttctatggtagtagcaacattttg |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41594041 |
atgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtagcaatgtttttctatggtagtagcaacattttg |
41594140 |
T |
|
| Q |
261 |
ttcacattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttcaattaaacttt |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41594141 |
ttcacattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttcaattaaacttt |
41594240 |
T |
|
| Q |
361 |
tgaagcataagtgattttgacttatagaattat |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
41594241 |
tgaagcataagtgattttgacttatagaattat |
41594273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 61 - 393
Target Start/End: Complemental strand, 12869837 - 12869505
Alignment:
| Q |
61 |
aactgcaatgttttcatatttttgttgttatgcacatcttgaggaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagca |
160 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12869837 |
aacttcaatgttttcatatttttgttgttatgcacatcttgagcaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagca |
12869738 |
T |
|
| Q |
161 |
atgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtatcaatgtttttctatggtagtagcaacattttg |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12869737 |
atgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtagcaatgtttttctatggtagtagcaacattttg |
12869638 |
T |
|
| Q |
261 |
ttcacattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttcaattaaacttt |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12869637 |
ttcacattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttcaattaaacttt |
12869538 |
T |
|
| Q |
361 |
tgaagcataagtgattttgacttatagaattat |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
12869537 |
tgaagcataagtgattttgacttatagaattat |
12869505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 61 - 393
Target Start/End: Original strand, 43522545 - 43522877
Alignment:
| Q |
61 |
aactgcaatgttttcatatttttgttgttatgcacatcttgaggaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagca |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43522545 |
aactgcaatgttttcatatttttgttgttatgcacatcttgagcaaccttgcatttgttatgtgattctcttctcttgctatggcagattggcagtagca |
43522644 |
T |
|
| Q |
161 |
atgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtatcaatgtttttctatggtagtagcaacattttg |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
43522645 |
atgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtagcaatgtttttctatggtagtagcaacattttg |
43522744 |
T |
|
| Q |
261 |
ttcacattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttcaattaaacttt |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43522745 |
ttcacattttgttcataaatgaatgtttttctatggcagtggcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttcaattaaacttt |
43522844 |
T |
|
| Q |
361 |
tgaagcataagtgattttgacttatagaattat |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
43522845 |
tgaagcataagtgattttgacttatagaattat |
43522877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 61 - 393
Target Start/End: Original strand, 14006810 - 14007131
Alignment:
| Q |
61 |
aactgcaatgttttcatatttttgttgttatgcacatcttgaggaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagca |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14006810 |
aactgcaatgttttcatatttttgttgttatgcacatcttgagcaaccttgcatttgttatgtgattctcatctcttgttatggcagattggcagtagca |
14006909 |
T |
|
| Q |
161 |
atgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtatcaatgtttttctatggtagtagcaacattttg |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14006910 |
atgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtagcaatgtttttctatggtagtagca-------- |
14007001 |
T |
|
| Q |
261 |
ttcacattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttcaattaaacttt |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14007002 |
---acattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttcaattaaacttt |
14007098 |
T |
|
| Q |
361 |
tgaagcataagtgattttgacttatagaattat |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
14007099 |
tgaagcataagtgattttgacttatagaattat |
14007131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 276 - 393
Target Start/End: Complemental strand, 23123785 - 23123668
Alignment:
| Q |
276 |
taaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttcaattaaacttttgaagcataagtgat |
375 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23123785 |
taaatgaatgtttttatatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgtttccaattaaacttttgaagcataagtgat |
23123686 |
T |
|
| Q |
376 |
tttgacttatagaattat |
393 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
23123685 |
tttgacttatagaattat |
23123668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 61 - 182
Target Start/End: Complemental strand, 23123989 - 23123876
Alignment:
| Q |
61 |
aactgcaatgttttcatatttttgttgttatgcacatcttgaggaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagca |
160 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
23123989 |
aactacaatgttttcatatttttgttgttatgcacatcttgagcaaccttgcaattgttatgtgattctctgctcttgttatg--------gcagtagca |
23123898 |
T |
|
| Q |
161 |
atgttatcacggcccacccaca |
182 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
23123897 |
atgttatcacggcccacccaca |
23123876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 23123836 - 23123753
Alignment:
| Q |
150 |
tggcagtagcaatgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtatcaatgt |
234 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| |||||||||| |||||| |
|
|
| T |
23123836 |
tggcagtagcaatgttatcacggctcacccacattttgttcatattattggta-aatgaatgtttttatatggcagtagcaatgt |
23123753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 150 - 393
Target Start/End: Complemental strand, 22512411 - 22512190
Alignment:
| Q |
150 |
tggcagtagcaatgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtatcaatgtttttctatggtagta |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
22512411 |
tggcagtagcaatgttatcacggcccacccacattttgttcatattattggtagcggcaatgtttttctatgg----------------------tagta |
22512334 |
T |
|
| Q |
250 |
gcaacattttgttcacattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttc |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
22512333 |
gcaacattttgttcacattttgttcataaatgaatgtttttctatggcagtcgcaatgtgccaatgtgttatttgcaatgaatatgttctaattgtttcc |
22512234 |
T |
|
| Q |
350 |
aattaaacttttgaagcataagtgattttgacttatagaattat |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22512233 |
aattaaacttttgaagcataagtgattttgacttatagaattat |
22512190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 61 - 182
Target Start/End: Complemental strand, 22512564 - 22512451
Alignment:
| Q |
61 |
aactgcaatgttttcatatttttgttgttatgcacatcttgaggaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagca |
160 |
Q |
| |
|
||||| ||| |||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| || |||||||| |
|
|
| T |
22512564 |
aactggaatattttcagttttttgtagttatgcacatcttgagcaaccttgcatttgttatgtgattctcttatcttgtta--------tgacagtagca |
22512473 |
T |
|
| Q |
161 |
atgttatcacggcccacccaca |
182 |
Q |
| |
|
|||||||||||| ||||||||| |
|
|
| T |
22512472 |
atgttatcacgggccacccaca |
22512451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 368
Target Start/End: Original strand, 39702798 - 39702855
Alignment:
| Q |
312 |
aatgtgtt-atttgcaatgaatatgttctaattgttttcaattaaacttttgaagcat |
368 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||| || ||||||||||||||||| |
|
|
| T |
39702798 |
aatgtgttcatttgcaatgaatatgttctaatcgtttccagttaaacttttgaagcat |
39702855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 312 - 379
Target Start/End: Complemental strand, 48725183 - 48725115
Alignment:
| Q |
312 |
aatgtgtt-atttgcaatgaatatgttctaattgttttcaattaaacttttgaagcataagtgattttg |
379 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
48725183 |
aatgtgttcatttgcaatgaatatgttctaattgtttccaattaaacttttgaagcatcagtgattttg |
48725115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 368
Target Start/End: Complemental strand, 42884014 - 42883957
Alignment:
| Q |
312 |
aatgtgtt-atttgcaatgaatatgttctaattgttttcaattaaacttttgaagcat |
368 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
42884014 |
aatgtgttcattttcaatgaatatgttctaattgtttccagttaaacttttgaagcat |
42883957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 32103315 - 32103271
Alignment:
| Q |
73 |
ttcatatttttgttgttatgcacatcttgaggaaccttgcatttg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| | |||||| |
|
|
| T |
32103315 |
ttcatatttttgttgttatgcacatcttgagcaaccgttcatttg |
32103271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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