View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1291_low_3 (Length: 944)
Name: NF1291_low_3
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1291_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 646; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 191 - 937
Target Start/End: Complemental strand, 35090023 - 35089283
Alignment:
| Q |
191 |
ttaagttcaaattgtaaatgtattagtttccctaaaaagtgatacctggttacttttgggaacccatgcttcttgctatgagtgatttttagggtttcta |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||| |
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| T |
35090023 |
ttaagttcaaattgtaaatgtattagtttccctaaaaagtgatacctggttacttttgggaaccgatgctttttgctatgagtgatttt-agggtttcta |
35089925 |
T |
|
| Q |
291 |
atttagtttcacaactctcacaatgtgaagtactttaaagttcttgacaagaggaattctttggccaaatacacatgaacctacactttcaaaatgcatc |
390 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35089924 |
ctttagtttcgcaactctcacaatgtgaagtactttaaagttcttgacaagaggaattctttggccaaatacacatgaacctacattttcaaaatgcatc |
35089825 |
T |
|
| Q |
391 |
atcatatatctgtgcactattgaacaaattggttcttgttcaaatatttcatattttaattgctctttgcaggggtattgacttagcaaagtggaaagaa |
490 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35089824 |
atcatatatctatgcactattgaacaaattggttcttgttcaaatatttcatattttaattgctctttgcaggggtattgacttagcaaagtggaaagaa |
35089725 |
T |
|
| Q |
491 |
cttcgggaggaaaggggagaagtggctaatttggaaaaatttgctcagcacgtgcatggaaataattttataccaaacacggcattagtagactgcacgg |
590 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35089724 |
cttcgggaggaaagaggagaagtggctaatttggaaaaatttgctcagcacgtgcatggaaataattttataccaaacacggcattagtagactgcacgg |
35089625 |
T |
|
| Q |
591 |
ctgattctatcattgctggccattactatgagtggttgtgcaaaggaatacatgtaattacccccaataagaaggcaaattcgggaccacttgagcaggt |
690 |
Q |
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| T |
35089624 |
ctgattctatcattgctggccattactatgagtggttgtgcaaaggaatacatgtaattacccccaataagaaggcaaattcgggaccacttgagcaggt |
35089525 |
T |
|
| Q |
691 |
aaagtaactcataatgtgtttttgatggatataatattcttaactgtttttcacttgtctcgtgtaattggtgctgtaggtttttgaaattccaaaccta |
790 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35089524 |
aaagtaacccataatgtgtttttgatggatataatattcttagctatttttcacttgtctcgtgtaattggtgctgtaggtttttgaaattccaaaccta |
35089425 |
T |
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| Q |
791 |
ttttgtcatctgctggaaatggaaattcccatacataaatttaggttcatttgttttcaacttttctatgtgnnnnnnnnnnnnnnnnccagtttaagga |
890 |
Q |
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| T |
35089424 |
ttttgtcatctgctggaaatggaaattcccatacataaatttaggttcatttgttttcaacttttctatgtg-----aaaaaaaaataccagtttaagga |
35089330 |
T |
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| Q |
891 |
aaagaggactactcatattcgtcatttacgtcgtatcctctctgctc |
937 |
Q |
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| T |
35089329 |
aaagaggactactcatattcgtcatttacgtcgtatcctctctgctc |
35089283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 79 - 190
Target Start/End: Complemental strand, 35090187 - 35090076
Alignment:
| Q |
79 |
accacagacaaggcacatagtcataacagattaccaactaggacatgaacttagttgacattttaggcttcaagctatgtggatatgcattagtttcact |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35090187 |
accacagacaaggcacatagtcataacagattaccaactaggacatgaacttagttgacattttaggcttcaagctatgtggatatgcattagtttcact |
35090088 |
T |
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| Q |
179 |
aaaaatgatgtg |
190 |
Q |
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|||||||||||| |
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| T |
35090087 |
aaaaatgatgtg |
35090076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 457 - 682
Target Start/End: Original strand, 38152186 - 38152411
Alignment:
| Q |
457 |
ttgcaggggtattgacttagcaaagtggaaagaacttcgggaggaaaggggagaagtggctaatttggaaaaatttgctcagcacgtgcatggaaataat |
556 |
Q |
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||||||||| || ||||||| |||||||| |||| |||| ||||||| || ||||||||| ||||||||||||||| ||| || || || |||||| || |
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| T |
38152186 |
ttgcaggggaatcgacttagtaaagtggagagaaattcgagaggaaaaaggtgaagtggctgatttggaaaaatttgttcaacatgtacacggaaatcat |
38152285 |
T |
|
| Q |
557 |
tttataccaaacacggcattagtagactgcacggctgattctatcattgctggccattactatgagtggttgtgcaaaggaatacatgtaattaccccca |
656 |
Q |
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||||||||||||||| |||||||||||||| ||||| || |||| || ||||||| |||| ||| || |||| |||||||||||||| ||||||| |
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| T |
38152286 |
gttataccaaacacggttttagtagactgcacagctgactccgtcatagcaagccattatgatgactggctgcgcaagggaatacatgtaatcaccccca |
38152385 |
T |
|
| Q |
657 |
ataagaaggcaaattcgggaccactt |
682 |
Q |
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|||| ||||||||||| ||||||||| |
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| T |
38152386 |
ataaaaaggcaaattcaggaccactt |
38152411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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