View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1291_low_31 (Length: 376)
Name: NF1291_low_31
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1291_low_31 |
 | |
|
| [»] scaffold0669 (1 HSPs) |
| | |
|
| [»] scaffold0329 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 14815494 - 14815794
Alignment:
| Q |
1 |
ctctttatctgatactgatacttctatcccttcctgtcaacctccaatcattgatgatattaccacttcttcttcatcaactttacctcttactcgtcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14815494 |
ctctttatctgatactgatacttctatcccttcctgtcaacctccaatcattgatgatattactacttcttcttcatcaactttacctcttactcctcct |
14815593 |
T |
|
| Q |
101 |
tcttcacctgttccacctattattcccagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaataatcttcaagcttcca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14815594 |
tcttcacctgttccacctattattcccagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaacaatcttcaagcttcca |
14815693 |
T |
|
| Q |
201 |
catatcctatttctcattttctttctcataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacctgagcctaaatcctatgc |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14815694 |
catatcctatttctcattttctttcccataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacctgagcctaaatcctatgc |
14815793 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
|
| |
|
|
| T |
14815794 |
t |
14815794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 5240036 - 5240336
Alignment:
| Q |
1 |
ctctttatctgatactgatacttctatcccttcctgtcaacctccaatcattgatgatattaccacttcttcttcatcaactttacctcttactcgtcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5240036 |
ctctttatctgatactgatacttctatcccttcctgtcaacctccaatcattgatgatattactacttcttcttcatcaactttacctcttactcctcct |
5240135 |
T |
|
| Q |
101 |
tcttcacctgttccacctattattcccagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaataatcttcaagcttcca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
5240136 |
tcttcacctgttccacctattattcccagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaacaatcttcaagcttcga |
5240235 |
T |
|
| Q |
201 |
catatcctatttctcattttctttctcataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacctgagcctaaatcctatgc |
300 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5240236 |
catatcatatttctcattttctttcccataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacctgagcctaaatcctatgc |
5240335 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
|
| |
|
|
| T |
5240336 |
t |
5240336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 10867578 - 10867878
Alignment:
| Q |
1 |
ctctttatctgatactgatacttctatcccttcctgtcaacctccaatcattgatgatattaccacttcttcttcatcaactttacctcttactcgtcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| |
|
|
| T |
10867578 |
ctctttatctgatactgatacttctatcccttcctgtcaacctccaatcattgatgatattaccacttcttcttcatcaattttacctcatactcctcct |
10867677 |
T |
|
| Q |
101 |
tcttcacctgttccacctattattcccagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaataatcttcaagcttcca |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10867678 |
tcttcacctgttcctcctattattcccagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaacaatcttcaagcttcca |
10867777 |
T |
|
| Q |
201 |
catatcctatttctcattttctttctcataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacctgagcctaaatcctatgc |
300 |
Q |
| |
|
||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10867778 |
catatcccatttctcattttatttcccataataatatttctaacaatcattcttcttttgttatgtctttacattcacaaccttagcctaaatcctatgc |
10867877 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
|
| |
|
|
| T |
10867878 |
t |
10867878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 10653433 - 10653733
Alignment:
| Q |
1 |
ctctttatctgatactgatacttctatcccttcctgtcaacctccaatcattgatgatattaccacttcttcttcatcaactttacctcttactcgtcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||| |||| |
|
|
| T |
10653433 |
ctctttatctgatactgatacttctatcccttcctgtcaacctccaatcattgatgatattaccacttcctcttcatcaattttacctcatactcctcct |
10653532 |
T |
|
| Q |
101 |
tcttcacctgttccacctattattcccagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaataatcttcaagcttcca |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10653533 |
tcttcacctgttcctcctattattcccagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaacaatcttcaagcttcca |
10653632 |
T |
|
| Q |
201 |
catatcctatttctcattttctttctcataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacctgagcctaaatcctatgc |
300 |
Q |
| |
|
||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10653633 |
catatcccatttctcattttatttcccataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacctaagcctaaatcctatgc |
10653732 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
|
| |
|
|
| T |
10653733 |
t |
10653733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 2360253 - 2360553
Alignment:
| Q |
1 |
ctctttatctgatactgatacttctatcccttcctgtcaacctccaatcattgatgatattaccacttcttcttcatcaactttacctcttactcgtcct |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2360253 |
ctctctatctgatactgatacttctatcccttcttgtcaacctccaatcattgatgatattaccacttcttcttcatcaactttacctcttacctctcct |
2360352 |
T |
|
| Q |
101 |
tcttcacctgttccacctattattcccagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaataatcttcaagcttcca |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
2360353 |
tcttcacctgttccacccattattcccagacattctaccagaaaaaccactactccatcttacctccaagattatatttgtaacaatcttcaaacttcca |
2360452 |
T |
|
| Q |
201 |
catatcctatttctcattttctttctcataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacctgagcctaaatcctatgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2360453 |
catatcctatttctcattttctttctcataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacctgagcctaaatcctatgc |
2360552 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
|
| |
|
|
| T |
2360553 |
t |
2360553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 52778506 - 52778579
Alignment:
| Q |
137 |
accagaaacaccactactccatcttacctccaagattatatttgtaataatcttcaagcttccacatatcctat |
210 |
Q |
| |
|
|||||| | ||||||||||| |||||| | ||||||||| ||||||||||| |||| ||||| | |||||||| |
|
|
| T |
52778506 |
accagacaaaccactactccttcttacttacaagattatgtttgtaataatattcatacttccccttatcctat |
52778579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 612705 - 612987
Alignment:
| Q |
19 |
tacttctatcccttcctgtcaacctccaatcattgatgatattaccacttcttcttcatcaactttacctcttactcgtccttcttcacctgttccacct |
118 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||| ||||| |||||| ||||| ||| |||||||||||| |||| |
|
|
| T |
612705 |
tacttctatcccttcttgtcaacttccaatcattgatgatattaccactttctcttcaccaactctacctcctactcttccatcttcacctgttttacct |
612804 |
T |
|
| Q |
119 |
attattcccagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaataatcttcaagcttccacatatcctatttctcatt |
218 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |
|
|
| T |
612805 |
gttattcacagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaacaatattcaagcttccacatatcccatttctcatt |
612904 |
T |
|
| Q |
219 |
ttctttctcataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacctgagcctaaatcctatgct |
301 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
612905 |
ttctttcacataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacctgagcctaaatcctatgct |
612987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 619099 - 619381
Alignment:
| Q |
19 |
tacttctatcccttcctgtcaacctccaatcattgatgatattaccacttcttcttcatcaactttacctcttactcgtccttcttcacctgttccacct |
118 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||| ||||| |||||| ||||| ||| |||||||||||| |||| |
|
|
| T |
619099 |
tacttctatcccttcttgtcaacttccaatcattgatgatattaccactttctcttcaccaactctacctcctactcttccatcttcacctgttttacct |
619198 |
T |
|
| Q |
119 |
attattcccagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaataatcttcaagcttccacatatcctatttctcatt |
218 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |
|
|
| T |
619199 |
gttattcacagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaacaatattcaagcttccacatatcccatttctcatt |
619298 |
T |
|
| Q |
219 |
ttctttctcataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacctgagcctaaatcctatgct |
301 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
619299 |
ttctttcacataataatatttctaacaatcattcttcttttgttatgtctttacattcacaacctgagcctaaatcctatgct |
619381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0669 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0669
Description:
Target: scaffold0669; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 122 - 267
Target Start/End: Original strand, 2675 - 2820
Alignment:
| Q |
122 |
attcccagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaataatcttcaagcttccacatatcctatttctcattttc |
221 |
Q |
| |
|
||||| |||||||| || ||| | ||||||||||| |||||| | || ||||| || || |||||| || | || |||||||||||||| ||||| | |
|
|
| T |
2675 |
attcctagacattccactagacaaaccactactccttcttacttacaggattacatctgcaataatatttatgcatccacatatcctatccatcattata |
2774 |
T |
|
| Q |
222 |
tttctcataataatatttctaacaatcattcttcttttgttatgtc |
267 |
Q |
| |
|
|||||||| | ||| | ||||||||||||||||||||||||||||| |
|
|
| T |
2775 |
tttctcatcacaatttatctaacaatcattcttcttttgttatgtc |
2820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 210
Target Start/End: Original strand, 11824 - 11908
Alignment:
| Q |
126 |
ccagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaataatcttcaagcttccacatatcctat |
210 |
Q |
| |
|
||||| |||| |||||| | ||||||||||| |||||| | ||||||||| ||||||||||| |||| ||||| | |||||||| |
|
|
| T |
11824 |
ccagaaattccaccagacaaaccactactccttcttacttacaagattatgtttgtaataatattcatacttccccttatcctat |
11908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 29500183 - 29500267
Alignment:
| Q |
122 |
attcccagacattctaccagaaacaccactactccatcttacctccaagattatatttgtaataatcttcaagcttccacatatc |
206 |
Q |
| |
|
|||||||||||||| |||||| | ||||| ||||| |||||| | ||||||||||| || |||||| |||| ||||||| |||| |
|
|
| T |
29500183 |
attcccagacattccaccagacaaaccaccactccttcttacttacaagattatatatgcaataatattcattcttccacgtatc |
29500267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 12286126 - 12286199
Alignment:
| Q |
137 |
accagaaacaccactactccatcttacctccaagattatatttgtaataatcttcaagcttccacatatcctat |
210 |
Q |
| |
|
|||||| | ||||||||||| |||||| | ||||||||| ||||||||||| |||| ||||| | |||||||| |
|
|
| T |
12286126 |
accagacaaaccactactccttcttacttacaagattatgtttgtaataatattcatacttccccttatcctat |
12286199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 19586156 - 19586092
Alignment:
| Q |
146 |
accactactccatcttacctccaagattatatttgtaataatcttcaagcttccacatatcctat |
210 |
Q |
| |
|
||||||||||| |||||| | ||||||||| ||||||| ||| |||| ||||| |||||||||| |
|
|
| T |
19586156 |
accactactccttcttacttacaagattatgtttgtaagaatattcatacttccccatatcctat |
19586092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University