View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1291_low_4 (Length: 875)
Name: NF1291_low_4
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1291_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-151; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 8 - 356
Target Start/End: Complemental strand, 39670374 - 39670031
Alignment:
| Q |
8 |
caccacagagcatgaaagagacccacggcttacctcacatccacattacaacgaggatataaccataaagnnnnnnnnnnnnnnnnnnaataatacagtt |
107 |
Q |
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| T |
39670374 |
caccagagagcatgaaagagacccacggcttacctcacatccacattacaacgaggatataaccataaagtttttttttttttttt--aataatacagtt |
39670277 |
T |
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| Q |
108 |
taagatttttatatattaatcttaaaagtgtttcaagtaaattcaagtgttaaaattttaaaggttaattattaataaaatggataatccatgcacaaac |
207 |
Q |
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| T |
39670276 |
taagatttttatatattaatcttaaaagtgtttcaagtaaattcaagtgttaaaattttaaaggttaattattaataaaatggataatccatgcacaaac |
39670177 |
T |
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| Q |
208 |
aaatccattcacataagcacttagaaaattaattaatatagttctattttgataaaccatacaaattttatctataacttcccatattctggtcactatt |
307 |
Q |
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| T |
39670176 |
aaatccattcacataagcacttagaaaattaattaatatagttctattttgataaaccatacaaattttatct---acttcccatattctggtcactatt |
39670080 |
T |
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| Q |
308 |
tcaatctcaatgcaaaattattattatcagggtcatgcctccaagattt |
356 |
Q |
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| T |
39670079 |
tcaatctcaatgcaaaattattattatcagggtcatgcctccaagattt |
39670031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 534 - 790
Target Start/End: Complemental strand, 39664854 - 39664602
Alignment:
| Q |
534 |
ctcatcagcattaaattacagtatttggaaatacatttcctcctttattctcagacttatcagttttt-cacatctagtctagggttagggcttggcaaa |
632 |
Q |
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| T |
39664854 |
ctcatcagcattaaattacagtatttggaaatacatttcctcctttattctcggacttatcagttttttcacatctag-----ggttagggcttggcaaa |
39664760 |
T |
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| Q |
633 |
aacaggcccaatccaacccactaagtctaaaccgtcattttctatatagatagcattggacaagcagaaaaccctaggaaataaacctagtgatcacggc |
732 |
Q |
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| T |
39664759 |
aacaggcccaatccaacccactaagtctaaaccgtcattttatatatagatagcattggacaagcagaaaaccctaggaaataaacctagtgatcacggc |
39664660 |
T |
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| Q |
733 |
agttccagaacagtttttgtatcatgtcggaggaagaaatacgtaaggttcatgtggt |
790 |
Q |
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| T |
39664659 |
agttccagaacagtttttgtatcatgtcggaggaagaaatacgtaaggcttatgtggt |
39664602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 354 - 533
Target Start/End: Complemental strand, 39665074 - 39664895
Alignment:
| Q |
354 |
tttattcaaaaggagtaaagctaattttattcacacaaataataacaaccatgaattctctgcgatgctctaaaacaaaaatcacacaagttaagccagg |
453 |
Q |
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| T |
39665074 |
tttattcaaaaggagtaaagctaattttattcacacaaataataacaaccacgaattctctgcgatgctctaaaacaaaaatcacacaagttaagccagg |
39664975 |
T |
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| Q |
454 |
attatctaactgaaacaggattatcaggtgagtttgaaatataccccataatctattttttgagccgtgttattattggt |
533 |
Q |
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| T |
39664974 |
attatctaaccgaaacaggattatcaggtgagtttgaaatataccccataatctattttttgagccgtgttattattggt |
39664895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 28714814 - 28714744
Alignment:
| Q |
97 |
ataatacagtttaagatttttatatattaatcttaaaagtgtttcaagtaaattcaagtgttaaaattttaa |
168 |
Q |
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| T |
28714814 |
ataatatagtttaaaacttttatgtattaatcttgaa-gtatttcaagtaaattcaagtgttaacattttaa |
28714744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 410 - 444
Target Start/End: Complemental strand, 39658307 - 39658273
Alignment:
| Q |
410 |
tctctgcgatgctctaaaacaaaaatcacacaagt |
444 |
Q |
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| T |
39658307 |
tctctgccatgctctaaaacaaaaatcacacaagt |
39658273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 37424209 - 37424280
Alignment:
| Q |
97 |
ataatacagtttaagatttttatatattaatcttaaaagtgtttcaagtaaattcaagtgttaaaattttaaa |
169 |
Q |
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| T |
37424209 |
ataatatagtttaagacttttatatagtaatcttaaaa-tgtttcaagtaaattcaagtgttagcattttaaa |
37424280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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