View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1291_low_47 (Length: 316)

Name: NF1291_low_47
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1291_low_47
NF1291_low_47
[»] chr6 (2 HSPs)
chr6 (1-221)||(14815297-14815518)
chr6 (90-133)||(5919398-5919441)
[»] chr4 (5 HSPs)
chr4 (1-221)||(5239839-5240060)
chr4 (1-221)||(10867381-10867602)
chr4 (1-221)||(10653236-10653457)
chr4 (119-222)||(22176627-22176730)
chr4 (91-181)||(23167105-23167195)
[»] chr1 (2 HSPs)
chr1 (1-221)||(2360056-2360277)
chr1 (92-222)||(52778172-52778302)
[»] scaffold0329 (1 HSPs)
scaffold0329 (92-222)||(11501-11631)
[»] chr3 (3 HSPs)
chr3 (92-222)||(12285792-12285922)
chr3 (92-222)||(19586369-19586499)
chr3 (124-222)||(7420343-7420440)
[»] chr8 (2 HSPs)
chr8 (20-109)||(612602-612692)
chr8 (20-109)||(618996-619086)
[»] chr2 (1 HSPs)
chr2 (91-222)||(29499855-29499986)
[»] scaffold0669 (1 HSPs)
scaffold0669 (141-221)||(406-486)
[»] chr5 (1 HSPs)
chr5 (165-221)||(9846714-9846770)


Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14815518 - 14815297
Alignment:
Q  1 agaagtatcagtatcagataaagagggaaaatgagaaaa-tattcccaatcaggagaagtagaggatggagaatgagggtaagggagatggttttcatga 99  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14815518 agaagtatcagtatcagataaagagggaaaatgagaaaaatattcccaatcaggagaagtagaggatggagaatgagggtaagggagatggttttcatga 14815419  T
Q  100 aaagtaacatgtcttgacacaaaaatctctctagattgaagatcatagagagtaaaacccttataaccagacttgtaacctaagaatagagactttctag 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14815418 aaagtaacatgtcttgacacaaaaatctctctagattgaagatcatagagagtaaaacccttataaccagacttgtaacctaagaatagagactttctag 14815319  T
Q  200 ctctaggttgcagtttggttct 221  Q
    ||||||||||||||||||||||    
T  14815318 ctctaggttgcagtttggttct 14815297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 5919398 - 5919441
Alignment:
Q  90 gttttcatgaaaagtaacatgtcttgacacaaaaatctctctag 133  Q
    |||||||||||||||||||||||| || |||||||| |||||||    
T  5919398 gttttcatgaaaagtaacatgtctggaaacaaaaatttctctag 5919441  T

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Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 5240060 - 5239839
Alignment:
Q  1 agaagtatcagtatcagataaagagggaaaatgagaaaa-tattcccaatcaggagaagtagaggatggagaatgagggtaagggagatggttttcatga 99  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5240060 agaagtatcagtatcagataaagagggaaaatgagaaaaatattcccaatcaggagaagtagaggatggagaatgagggtaagggagatggttttcatga 5239961  T
Q  100 aaagtaacatgtcttgacacaaaaatctctctagattgaagatcatagagagtaaaacccttataaccagacttgtaacctaagaatagagactttctag 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5239960 aaagtaacatgtcttgacacaaaaatctctctagattgaagatcatagagagtaaaacccttataaccagacttgtaacctaagaatagagactttctag 5239861  T
Q  200 ctctaggttgcagtttggttct 221  Q
    ||||||||||||||||||||||    
T  5239860 ctctaggttgcagtttggttct 5239839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 10867602 - 10867381
Alignment:
Q  1 agaagtatcagtatcagataaagagggaaaatgagaaaa-tattcccaatcaggagaagtagaggatggagaatgagggtaagggagatggttttcatga 99  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||    
T  10867602 agaagtatcagtatcagataaagagggaaaatgagaaaaatattcccaatcatgagaagtagaggatggggaatgagggtatgggagatggttttcatga 10867503  T
Q  100 aaagtaacatgtcttgacacaaaaatctctctagattgaagatcatagagagtaaaacccttataaccagacttgtaacctaagaatagagactttctag 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10867502 aaagtaacatgtcttgacacaaaaatctctctagattgaagatcatagagagtaaaacccttataaccagacttgtaacctaagaataaagactttctag 10867403  T
Q  200 ctctaggttgcagtttggttct 221  Q
    ||||||||| ||||||||||||    
T  10867402 ctctaggttacagtttggttct 10867381  T

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Target: chr4; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 10653457 - 10653236
Alignment:
Q  1 agaagtatcagtatcagataaagagggaaaatgagaaaa-tattcccaatcaggagaagtagaggatggagaatgagggtaagggagatggttttcatga 99  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||| ||||||| ||||||||||| ||||||||||||||||||    
T  10653457 agaagtatcagtatcagataaagagggaaaatgagaaaaatattcccaatcatgataagtaaaggatggggaatgagggtatgggagatggttttcatga 10653358  T
Q  100 aaagtaacatgtcttgacacaaaaatctctctagattgaagatcatagagagtaaaacccttataaccagacttgtaacctaagaatagagactttctag 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10653357 aaagtaacatgtcttgacacaaaaatctctctagattgaagatcatagagagtaaaacccttataaccagacttgtaacctaagaatagagactttctag 10653258  T
Q  200 ctctaggttgcagtttggttct 221  Q
    ||||||||| ||||||||||||    
T  10653257 ctctaggttacagtttggttct 10653236  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 22176627 - 22176730
Alignment:
Q  119 caaaaatctctctagattgaagatcatagagagtaaaacccttataaccagacttgtaacctaagaatagagactttctagctctaggttgcagtttggt 218  Q
    |||| |||||||||||||||| |||||| ||||||||||| ||| || | || ||||||||||| || | ||| || | |||||||||||||| ||| ||    
T  22176627 caaatatctctctagattgaatatcatatagagtaaaacctttaaaatctgatttgtaacctaaaaaaatagatttacgagctctaggttgcaattttgt 22176726  T
Q  219 tctg 222  Q
    ||||    
T  22176727 tctg 22176730  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 181
Target Start/End: Original strand, 23167105 - 23167195
Alignment:
Q  91 ttttcatgaaaagtaacatgtcttgacacaaaaatctctctagattgaagatcatagagagtaaaacccttataaccagacttgtaaccta 181  Q
    ||||||||||| || |||||||| || | |||||| |||||||| ||||| ||||| ||||| || || || ||||| |||| ||||||||    
T  23167105 ttttcatgaaatgtgacatgtctagagataaaaatttctctagaatgaaggtcataaagagtgaatcctttgtaacctgactggtaaccta 23167195  T

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Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2360277 - 2360056
Alignment:
Q  1 agaagtatcagtatcagataaagagggaaaatgagaaaa-tattcccaatcaggagaagtagaggatggagaatgagggtaagggagatggttttcatga 99  Q
    |||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2360277 agaagtatcagtatcagatagagagggaaaatgggaaaaatattcccaatcaggagaagtagaggatggagaatgagggtaagggagatggttttcatga 2360178  T
Q  100 aaagtaacatgtcttgacacaaaaatctctctagattgaagatcatagagagtaaaacccttataaccagacttgtaacctaagaatagagactttctag 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2360177 aaagtaacatgtcttgacacaaaaatctctctagattgaagatcatagagagtaaaacccttataaccagacttgtaacctaagaataaagactttctag 2360078  T
Q  200 ctctaggttgcagtttggttct 221  Q
    ||||||||||||||||||||||    
T  2360077 ctctaggttgcagtttggttct 2360056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 92 - 222
Target Start/End: Complemental strand, 52778302 - 52778172
Alignment:
Q  92 tttcatgaaaagtaacatgtcttgacacaaaaatctctctagattgaagatcatagagagtaaaacccttataaccagacttgtaacctaagaatagaga 191  Q
    ||||||||||||| |||||||| || ||||| |||||||||||||||| |||||| ||||||||||| ||| |||| || ||||||||||| || | |||    
T  52778302 tttcatgaaaagtgacatgtctagagacaaatatctctctagattgaatatcatatagagtaaaacctttaaaacctgatttgtaacctaaaaaaataga 52778203  T
Q  192 ctttctagctctaggttgcagtttggttctg 222  Q
     || | |||||||||||||| ||| ||||||    
T  52778202 tttacgagctctaggttgcaattttgttctg 52778172  T

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Target: scaffold0329 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 222
Target Start/End: Complemental strand, 11631 - 11501
Alignment:
Q  92 tttcatgaaaagtaacatgtcttgacacaaaaatctctctagattgaagatcatagagagtaaaacccttataaccagacttgtaacctaagaatagaga 191  Q
    ||||||||||||| |||||||| || ||||| |||||||||||||||| |||||| ||||||||||| ||| || | || ||||||||||| || | |||    
T  11631 tttcatgaaaagtgacatgtctagagacaaatatctctctagattgaatatcatatagagtaaaacctttaaaatctgatttgtaacctaaaaaaataga 11532  T
Q  192 ctttctagctctaggttgcagtttggttctg 222  Q
     || | |||||||||||||| ||| ||||||    
T  11531 tttacgagctctaggttgcaattttgttctg 11501  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 222
Target Start/End: Complemental strand, 12285922 - 12285792
Alignment:
Q  92 tttcatgaaaagtaacatgtcttgacacaaaaatctctctagattgaagatcatagagagtaaaacccttataaccagacttgtaacctaagaatagaga 191  Q
    ||||||||||||| |||||||| || ||||| |||||||||||||||| |||||| ||||||||||| ||  |||| || ||||||||||| || | |||    
T  12285922 tttcatgaaaagtgacatgtctggagacaaatatctctctagattgaatatcatatagagtaaaacctttcaaacctgatttgtaacctaaaaaaataga 12285823  T
Q  192 ctttctagctctaggttgcagtttggttctg 222  Q
     || | |||||||||||||| ||| ||||||    
T  12285822 tttacgagctctaggttgcaattttgttctg 12285792  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 222
Target Start/End: Original strand, 19586369 - 19586499
Alignment:
Q  92 tttcatgaaaagtaacatgtcttgacacaaaaatctctctagattgaagatcatagagagtaaaacccttataaccagacttgtaacctaagaatagaga 191  Q
    ||||||||||||| |||||||  || ||||| |||||||||||||||| |||||| ||||||||||| ||| |||| || |||||||||||||| | |||    
T  19586369 tttcatgaaaagtgacatgtcgggagacaaatatctctctagattgaatatcatatagagtaaaacctttaaaacctgatttgtaacctaagaaaataga 19586468  T
Q  192 ctttctagctctaggttgcagtttggttctg 222  Q
     || | ||||||| |||||| ||| ||||||    
T  19586469 tttacgagctctaagttgcaattttgttctg 19586499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 7420440 - 7420343
Alignment:
Q  124 atctctctagattgaagatcatagagagtaaaacccttataaccagacttgtaacctaagaatagagactttctagctctaggttgcagtttggttctg 222  Q
    |||||||||||||||| |||||||||||||||||||||| |||| || ||||| |||||||| |  || |||| |||||||||||||| ||| ||||||    
T  7420440 atctctctagattgaatatcatagagagtaaaacccttaaaacctga-ttgtagcctaagaaaatggattttcgagctctaggttgcaattttgttctg 7420343  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 612692 - 612602
Alignment:
Q  20 aaagagggaaaatgagaaaa-tattcccaatcaggagaagtagaggatggagaatgagggtaagggagatggttttcatgaaaagtaacat 109  Q
    |||||||||||||||||||| ||||||||||||||  ||||||| ||||| |||| ||| || |||||||||||||||||||||| |||||    
T  612692 aaagagggaaaatgagaaaaatattcccaatcaggtaaagtagaagatggggaataaggatatgggagatggttttcatgaaaagcaacat 612602  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 619086 - 618996
Alignment:
Q  20 aaagagggaaaatgagaaaa-tattcccaatcaggagaagtagaggatggagaatgagggtaagggagatggttttcatgaaaagtaacat 109  Q
    |||||||||||||||||||| ||||||||||||||  ||||||| ||||| |||| ||| || |||||||||||||||||||||| |||||    
T  619086 aaagagggaaaatgagaaaaatattcccaatcaggtaaagtagaagatggggaataaggatatgggagatggttttcatgaaaagcaacat 618996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 222
Target Start/End: Complemental strand, 29499986 - 29499855
Alignment:
Q  91 ttttcatgaaaagtaacatgtcttgacacaaaaatctctctagattgaagatcatagagagtaaaacccttataaccagacttgtaacctaagaatagag 190  Q
    |||||||||||||| |||||||| || ||||| ||||||||||| |  | |||||| || || || ||||| ||||| || ||||| |||||||| ||||    
T  29499986 ttttcatgaaaagtgacatgtctggatacaaatatctctctagaatataaatcataaagggtgaatcccttgtaacctgatttgtatcctaagaaaagag 29499887  T
Q  191 actttctagctctaggttgcagtttggttctg 222  Q
    | ||| ||||||| ||||| | ||| ||||||    
T  29499886 attttatagctctgggttgtaattttgttctg 29499855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0669 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 486 - 406
Alignment:
Q  141 atcatagagagtaaaacccttataaccagacttgtaacctaagaatagagactttctagctctaggttgcagtttggttct 221  Q
    |||||| ||||| || ||||||||||| |||||||| ||||| || | ||| ||| || |||||||||| | |||||||||    
T  486 atcataaagagtgaatcccttataacctgacttgtatcctaaaaaaatagattttatatctctaggttgtaatttggttct 406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 9846714 - 9846770
Alignment:
Q  165 accagacttgtaacctaagaatagagactttctagctctaggttgcagtttggttct 221  Q
    |||||||||||| |||||||| | ||||||||||||| |||| |  |||||||||||    
T  9846714 accagacttgtatcctaagaaaacagactttctagctttagggtcaagtttggttct 9846770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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