View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1291_low_48 (Length: 315)
Name: NF1291_low_48
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1291_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 30 - 303
Target Start/End: Original strand, 3286460 - 3286728
Alignment:
| Q |
30 |
aagctcaacgaatttacctttcttcagaattaagccttttccagctcagacgtcgccttaaaatatctcagcaaatttgtgcttacccaatagatttgaa |
129 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
3286460 |
aagctcagcgaatttacctttcttcagaattaagtcttttccagctcagaagccgccttaaaatatctcagcaaatttgtgcttacccaacaaatttgac |
3286559 |
T |
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| Q |
130 |
atgattatgaaattcacttagcgaatttctgctcgcccaacatactagaaaggattctgaataatgaaaattctaggattttctggcttgactcgctttt |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3286560 |
atgattatgaaattcacttagcgaatttctgctcgcccaacat-----ataggattctgaataatgaaaattctaggattttctcacttgactcgctttt |
3286654 |
T |
|
| Q |
230 |
ggatcgatttggctcacttagagcaattacttaaactcaaaatcttagttcttttccatctcctcagcgattca |
303 |
Q |
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|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3286655 |
ggatcgatttggcttacttagaggaattacttaaactcaaaatcttagttcttttccatctcctcagcgattca |
3286728 |
T |
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