View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1291_low_49 (Length: 314)

Name: NF1291_low_49
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1291_low_49
NF1291_low_49
[»] chr5 (2 HSPs)
chr5 (59-225)||(1676436-1676602)
chr5 (225-300)||(1676559-1676634)
[»] chr7 (2 HSPs)
chr7 (59-213)||(45495676-45495830)
chr7 (261-300)||(45495825-45495864)


Alignment Details
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 59 - 225
Target Start/End: Original strand, 1676436 - 1676602
Alignment:
Q  59 cacagacaaatcgttgaaatgggactcactttactgtctcatgcttctatccctcttaagttttgggaccacagttttactcaagctgtttctctcatca 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1676436 cacagacaaatcgttgaaatgggactcactttactgtctcatgcttctatccctcttaagttttgggaccacaattttactcaagctgtttctctcatca 1676535  T
Q  159 ataagcttccctcatctgccataccccaattctattctcctcaccatgcactatttcatactattcc 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1676536 ataagcttccctcatctgccataccccaattctattctcctcaccatgcactatttcatattattcc 1676602  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 225 - 300
Target Start/End: Original strand, 1676559 - 1676634
Alignment:
Q  225 ccccaattctattctcctcgccatgcactatttcatactattcctgactatactaatctcaaaatatttggctgtc 300  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||    
T  1676559 ccccaattctattctcctcaccatgcactatttcatattattcctgactatactaatctcaaagtgtttggctgtc 1676634  T

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Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 59 - 213
Target Start/End: Original strand, 45495676 - 45495830
Alignment:
Q  59 cacagacaaatcgttgaaatgggactcactttactgtctcatgcttctatccctcttaagttttgggaccacagttttactcaagctgtttctctcatca 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45495676 cacagacaaatcgttgaaatgggactcactttactgtctcatgcttctatccctcttaagttttgggaccacagttttactcaagctgtttctctcatca 45495775  T
Q  159 ataagcttccctcatctgccataccccaattctattctcctcaccatgcactatt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45495776 ataagcttccctcatctgccataccccaattctattctcctcaccatgcactatt 45495830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 300
Target Start/End: Original strand, 45495825 - 45495864
Alignment:
Q  261 actattcctgactatactaatctcaaaatatttggctgtc 300  Q
    ||||||||||||||||||||||||||| | ||||||||||    
T  45495825 actattcctgactatactaatctcaaagtgtttggctgtc 45495864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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