View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1291_low_50 (Length: 313)

Name: NF1291_low_50
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1291_low_50
NF1291_low_50
[»] chr2 (2 HSPs)
chr2 (218-293)||(19215544-19215620)
chr2 (224-278)||(19589281-19589335)
[»] chr7 (4 HSPs)
chr7 (218-293)||(1608831-1608906)
chr7 (218-277)||(2187905-2187964)
chr7 (218-277)||(19632940-19632999)
chr7 (142-215)||(2187812-2187884)
[»] chr5 (4 HSPs)
chr5 (218-277)||(37627427-37627486)
chr5 (218-277)||(37806536-37806596)
chr5 (221-293)||(33614671-33614743)
chr5 (262-293)||(14276313-14276344)
[»] chr1 (3 HSPs)
chr1 (218-293)||(41313953-41314030)
chr1 (139-215)||(41314051-41314126)
chr1 (127-171)||(10495134-10495178)
[»] chr8 (6 HSPs)
chr8 (224-293)||(454096-454166)
chr8 (218-277)||(29822677-29822737)
chr8 (218-277)||(7094156-7094216)
chr8 (218-277)||(7097889-7097949)
chr8 (218-288)||(45463027-45463097)
chr8 (141-217)||(29822583-29822658)
[»] chr3 (2 HSPs)
chr3 (225-290)||(5187503-5187569)
chr3 (224-277)||(8377591-8377645)
[»] chr4 (2 HSPs)
chr4 (233-284)||(11992141-11992192)
chr4 (175-217)||(637707-637749)


Alignment Details
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 218 - 293
Target Start/End: Original strand, 19215544 - 19215620
Alignment:
Q  218 tattgctaaggtaagggaaagggcgctccattttt-tattttatatatgtatttacttgttgttaaaatgatgatgt 293  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  19215544 tattgttaaggtaagggaaagggcgctccatttttctattttatatatgtatttacttgttgttaaaatgatgatgt 19215620  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 278
Target Start/End: Original strand, 19589281 - 19589335
Alignment:
Q  224 taaggtaagggaaagggcgctccattttttattttatatatgtatttacttgttg 278  Q
    |||||||||| ||| ||||||||||| |||||||| ||||||||| |||||||||    
T  19589281 taaggtaaggaaaatggcgctccattatttattttttatatgtatctacttgttg 19589335  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 218 - 293
Target Start/End: Complemental strand, 1608906 - 1608831
Alignment:
Q  218 tattgctaaggtaagggaaagggcgctccattttttattttatatatgtatttacttgttgttaaaatgatgatgt 293  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||    
T  1608906 tattgctaaggtaaggaaaagggcgctccattttttattttatatatgtatttactggttgtttaaaggatgatgt 1608831  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 2187905 - 2187964
Alignment:
Q  218 tattgctaaggtaagggaaagggcgctccattttttattttatatatgtatttacttgtt 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2187905 tattgctaaggtaagggaaagggcgctccattttttattttatatatgtatttacttgtt 2187964  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 19632999 - 19632940
Alignment:
Q  218 tattgctaaggtaagggaaagggcgctccattttttattttatatatgtatttacttgtt 277  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19632999 tattgttaaggtaagggaaagggcgctccattttttattttatatatgtatttacttgtt 19632940  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 2187812 - 2187884
Alignment:
Q  142 aataggaattggaaactaagttagtaaatatttatttgtgaaggtgaagattgggtggagcaaagaccacgagt 215  Q
    ||||||| ||||||||| ||||||||| || || |||||||||||  |||||  ||||||||||||||| ||||    
T  2187812 aataggagttggaaactgagttagtaagtactt-tttgtgaaggtatagattcagtggagcaaagaccatgagt 2187884  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 37627486 - 37627427
Alignment:
Q  218 tattgctaaggtaagggaaagggcgctccattttttattttatatatgtatttacttgtt 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37627486 tattgctaaggtaagggaaagggcgctccattttttattttatatatgtatttacttgtt 37627427  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 37806596 - 37806536
Alignment:
Q  218 tattgctaaggtaagggaaagggcgctccatt-ttttattttatatatgtatttacttgtt 277  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37806596 tattgctaaggtaagggaaagggcgctccatttttttattttatatatgtatttacttgtt 37806536  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 33614743 - 33614671
Alignment:
Q  221 tgctaaggtaagggaaagggcgctccattttttattttatatatgtatttacttgttgttaaaatgatgatgt 293  Q
    ||||||||||||| ||||||| ||||||| |||||||| ||||| ||| ||||||||| ||| ||||| ||||    
T  33614743 tgctaaggtaaggaaaagggcactccattatttattttttatatatatctacttgttgataacatgattatgt 33614671  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 293
Target Start/End: Complemental strand, 14276344 - 14276313
Alignment:
Q  262 tatgtatttacttgttgttaaaatgatgatgt 293  Q
    ||||||||||||||||||||||||||||||||    
T  14276344 tatgtatttacttgttgttaaaatgatgatgt 14276313  T

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Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 218 - 293
Target Start/End: Complemental strand, 41314030 - 41313953
Alignment:
Q  218 tattgctaaggtaagggaaagggcgctccatttttt--attttatatatgtatttacttgttgttaaaatgatgatgt 293  Q
    |||||||||||||||||||| |||||||||||||||  |||||||||||||| |||||||||||||||||||||||||    
T  41314030 tattgctaaggtaagggaaatggcgctccattttttctattttatatatgtagttacttgttgttaaaatgatgatgt 41313953  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 41314126 - 41314051
Alignment:
Q  139 agtaataggaattggaaactaagttagtaaatatttatttgtgaaggtgaagattgggtggagcaaagaccacgagt 215  Q
    |||||||||| ||||||||| ||||||||| || || |||||||||||| |||||  ||||||||||||||| ||||    
T  41314126 agtaataggagttggaaactgagttagtaagtactt-tttgtgaaggtgtagattccgtggagcaaagaccatgagt 41314051  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 10495178 - 10495134
Alignment:
Q  127 gtaggaatcaagagtaataggaattggaaactaagttagtaaata 171  Q
    |||||||| | ||||||||||||||||||| | ||||||||||||    
T  10495178 gtaggaattaggagtaataggaattggaaattgagttagtaaata 10495134  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 224 - 293
Target Start/End: Complemental strand, 454166 - 454096
Alignment:
Q  224 taaggtaagggaaagggcgctccatttttt-attttatatatgtatttacttgttgttaaaatgatgatgt 293  Q
    ||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  454166 taaggtacgggaaagggcgctccatttttttattttatatatgtagttacttgttgttaaaatgatgatgt 454096  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 29822677 - 29822737
Alignment:
Q  218 tattgctaaggtaagggaaagggcgctcca-ttttttattttatatatgtatttacttgtt 277  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29822677 tattgctaaggtaagggaaagggcgctccatttttttattttatatatgtatttacttgtt 29822737  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 7094216 - 7094156
Alignment:
Q  218 tattgctaaggtaagggaaagggcgctccatt-ttttattttatatatgtatttacttgtt 277  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7094216 tattgttaaggtaagggaaagggcgctccatttttttattttatatatgtatttacttgtt 7094156  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 7097949 - 7097889
Alignment:
Q  218 tattgctaaggtaagggaaagggcgctccatt-ttttattttatatatgtatttacttgtt 277  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7097949 tattgttaaggtaagggaaagggcgctccatttttttattttatatatgtatttacttgtt 7097889  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 218 - 288
Target Start/End: Complemental strand, 45463097 - 45463027
Alignment:
Q  218 tattgctaaggtaagggaaagggcgctccattttttattttatatatgtatttacttgttgttaaaatgat 288  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||| || || ||||||| |||||    
T  45463097 tattgctaaggtaagggaaagggcgctccattatttattttatatatatatctatttattgttaacatgat 45463027  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 29822583 - 29822658
Alignment:
Q  141 taataggaattggaaactaagttagtaaatatttatttgtgaaggtgaagattgggtggagcaaagaccacgagttg 217  Q
    |||||||||||  ||||| |||||||||||| || ||| ||||||||  ||||  |||||||||| |||||||||||    
T  29822583 taataggaattcaaaactgagttagtaaatactt-tttatgaaggtgtggattcagtggagcaaataccacgagttg 29822658  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 225 - 290
Target Start/End: Complemental strand, 5187569 - 5187503
Alignment:
Q  225 aaggtaagggaaagggcgctccatttttt-attttatatatgtatttacttgttgttaaaatgatga 290  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5187569 aaggtaagggaaaggtcgctccatttttttattttatatatgtatttacttgttgttaaaatgatga 5187503  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 8377591 - 8377645
Alignment:
Q  224 taaggtaagggaaagggcgctcca-ttttttattttatatatgtatttacttgtt 277  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8377591 taaggtaagggaaagggcgctccatttttttattttatatatgtatttacttgtt 8377645  T

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Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 11992192 - 11992141
Alignment:
Q  233 ggaaagggcgctccattttttattttatatatgtatttacttgttgttaaaa 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11992192 ggaaagggcgctccattttttattttatatatgtatttacttgttgttaaaa 11992141  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 637707 - 637749
Alignment:
Q  175 atttgtgaaggtgaagattgggtggagcaaagaccacgagttg 217  Q
    |||| |||||||||||||| |||||||||||||||||||||||    
T  637707 atttttgaaggtgaagatttggtggagcaaagaccacgagttg 637749  T

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