View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1291_low_52 (Length: 310)

Name: NF1291_low_52
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1291_low_52
NF1291_low_52
[»] chr4 (4 HSPs)
chr4 (69-248)||(47105209-47105388)
chr4 (142-207)||(35851271-35851336)
chr4 (142-237)||(43077265-43077359)
chr4 (140-248)||(16501997-16502106)
[»] chr6 (2 HSPs)
chr6 (141-240)||(26534417-26534514)
chr6 (147-237)||(6946858-6946948)
[»] chr3 (4 HSPs)
chr3 (141-247)||(33753629-33753734)
chr3 (171-219)||(22948432-22948480)
chr3 (155-234)||(22948318-22948397)
chr3 (141-225)||(38489083-38489168)
[»] chr2 (2 HSPs)
chr2 (141-216)||(29043993-29044067)
chr2 (109-139)||(10176567-10176597)
[»] chr7 (2 HSPs)
chr7 (146-217)||(27028464-27028535)
chr7 (141-219)||(9350010-9350087)
[»] chr8 (2 HSPs)
chr8 (141-234)||(30235808-30235900)
chr8 (109-139)||(39901582-39901612)
[»] chr1 (1 HSPs)
chr1 (173-215)||(29938945-29938987)


Alignment Details
Target: chr4 (Bit Score: 124; Significance: 9e-64; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 69 - 248
Target Start/End: Complemental strand, 47105388 - 47105209
Alignment:
Q  69 aggacagacgggaaaagatgatattttaagggnnnnnnnnagattacctttaaagaatggtgggtaacttaggggtgatgtccttttgggtgttgattgt 168  Q
    ||||||||||||||||||||||||||||||||        |||||| |||||||||||||||||||| |||||| | |||||||||||||||||||||||    
T  47105388 aggacagacgggaaaagatgatattttaagggttttttttagattatctttaaagaatggtgggtaatttagggataatgtccttttgggtgttgattgt 47105289  T
Q  169 aggggtgtctttattggtgttttgtttataggtgttccgcttatatacggcacatttagtttgtacttcatcagtctctg 248  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||    
T  47105288 aggggtgtctttattgatgttttgtttataggtgttccgcttatatacggcaccttttgtttgtacttcatcggtctctg 47105209  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 35851271 - 35851336
Alignment:
Q  142 ggtgatgtccttttgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccg 207  Q
    |||||||||||||||||||||||| | |||||||||||||||| |||||||||| || ||||||||    
T  35851271 ggtgatgtccttttgggtgttgatcgcaggggtgtctttattgatgttttgtttttatgtgttccg 35851336  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 237
Target Start/End: Original strand, 43077265 - 43077359
Alignment:
Q  142 ggtgatgtccttttgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccgcttatatacggcacatttagtttgtacttc 237  Q
    ||||||||||||||| |||||||| | |||||||||||| |||||| ||| |||  |||||||| || |||||||| |  |||| |||||||||||    
T  43077265 ggtgatgtccttttgagtgttgatcgcaggggtgtctttgttggtg-tttattttcaggtgttctgcctatatacgacgtattttgtttgtacttc 43077359  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 248
Target Start/End: Original strand, 16501997 - 16502106
Alignment:
Q  140 ggggtgatgtccttttgggtgttgattgtaggggtgtctttattggtg-ttttgtttataggtgttccgcttatatacggcacatttagtttgtacttca 238  Q
    |||||| ||||||||||| ||||| ||| | |||||||||| |||| | |||||| |  ||||||||||| ||||||| || | ||| ||||||||||||    
T  16501997 ggggtggtgtccttttggatgttgtttgcaagggtgtctttgttggagtttttgtattcaggtgttccgcctatatacagcgccttttgtttgtacttca 16502096  T
Q  239 tcagtctctg 248  Q
     | |||||||    
T  16502097 ccggtctctg 16502106  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 240
Target Start/End: Complemental strand, 26534514 - 26534417
Alignment:
Q  141 gggtgatgtccttttgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccgcttatatacggcacatttagtttgtacttcatc 240  Q
    |||||||||||||||||||||| |||| |||||||||||| |||  || ||||||  ||||||||||| |||||||| | | ||| ||||||||||||||    
T  26534514 gggtgatgtccttttgggtgtttattgcaggggtgtctttgttg--gtattgttttcaggtgttccgcctatatacgacgccttttgtttgtacttcatc 26534417  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 237
Target Start/End: Complemental strand, 6946948 - 6946858
Alignment:
Q  147 tgtccttttgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccgcttatatacggcacatttagtttgtacttc 237  Q
    ||||||| ||||||||||| | | |||||||||| ||||||||||||||    |||||||   |||||||||| | ||| |||||||||||    
T  6946948 tgtccttatgggtgttgatcgcaagggtgtctttgttggtgttttgttttcgagtgttccatctatatacggcgccttttgtttgtacttc 6946858  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 247
Target Start/End: Original strand, 33753629 - 33753734
Alignment:
Q  141 gggtgatgtccttttgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccgcttatatacggcacatttagtttgtacttcatc 240  Q
    ||||||||||||||||||||||||| | |||| ||||| |||||||||||| ||| ||||||||| |  |||||||||||  ||| |||||||| ||| |    
T  33753629 gggtgatgtccttttgggtgttgatcgcaggg-tgtctctattggtgttttatttttaggtgttctgtctatatacggcatcttttgtttgtacctcacc 33753727  T
Q  241 agtctct 247  Q
     ||||||    
T  33753728 ggtctct 33753734  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 22948480 - 22948432
Alignment:
Q  171 gggtgtctttattggtgttttgtttataggtgttccgcttatatacggc 219  Q
    |||||||||| ||||||||||||||  ||||||||||| ||||||||||    
T  22948480 gggtgtctttgttggtgttttgttttcaggtgttccgcatatatacggc 22948432  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 22948397 - 22948318
Alignment:
Q  155 tgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccgcttatatacggcacatttagtttgtac 234  Q
    ||||||||||| | | |||||||||| ||||||||||||||  |||||||| ||||||| | ||||| ||| | ||||||    
T  22948397 tgggtgttgatcgcatgggtgtctttgttggtgttttgttttcaggtgttctgcttataaatggcaccttttggttgtac 22948318  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 38489083 - 38489168
Alignment:
Q  141 gggtgatgtccttttgggtgttgattgtaggggtgtctttattggtgtttt-gtttataggtgttccgcttatatacggcacattt 225  Q
    ||||| ||| ||||||||||||||| | | || ||||||| ||||  |||| ||||| ||||||||||| ||||||||||| ||||    
T  38489083 gggtgttgttcttttgggtgttgatcgcatggatgtctttgttgggattttcgtttacaggtgttccgcctatatacggcatattt 38489168  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 29044067 - 29043993
Alignment:
Q  141 gggtgatgtccttttgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccgcttatatac 216  Q
    ||||||||| ||||||||||||||| | |||||||||||| ||||| ||||||||  ||||||||||| |||||||    
T  29044067 gggtgatgtacttttgggtgttgatcgcaggggtgtctttgttggt-ttttgttttcaggtgttccgcctatatac 29043993  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 139
Target Start/End: Original strand, 10176567 - 10176597
Alignment:
Q  109 agattacctttaaagaatggtgggtaactta 139  Q
    |||||||||||||||||||||||||||||||    
T  10176567 agattacctttaaagaatggtgggtaactta 10176597  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 27028464 - 27028535
Alignment:
Q  146 atgtccttttgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccgcttatatacg 217  Q
    |||||||||||||||||||| | | || |||||||||  ||||||||||| |||||||||| | ||||||||    
T  27028464 atgtccttttgggtgttgatcgcatggatgtctttatcagtgttttgtttttaggtgttccacctatatacg 27028535  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 9350010 - 9350087
Alignment:
Q  141 gggtgatgtccttttgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccgcttatatacggc 219  Q
    ||||| ||||||| |||| |||||||| |||||||||||| |||||| ||| |||  ||||||||||| ||||||||||    
T  9350010 gggtgttgtccttatgggggttgattgcaggggtgtctttgttggtgattt-tttccaggtgttccgcctatatacggc 9350087  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 234
Target Start/End: Complemental strand, 30235900 - 30235808
Alignment:
Q  141 gggtgatgtccttttgggtgttgattgtaggggtgtctttattggtgttttgtttataggtgttccgcttatatacggcacatttagtttgtac 234  Q
    ||||| ||||||||||||||||||| | | |||||||||| |||||| |||||||   | |||||||| |||||||||  | ||||||||||||    
T  30235900 gggtgttgtccttttgggtgttgatcgcaagggtgtctttgttggtg-tttgttttcggatgttccgcctatatacggagcctttagtttgtac 30235808  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 139
Target Start/End: Original strand, 39901582 - 39901612
Alignment:
Q  109 agattacctttaaagaatggtgggtaactta 139  Q
    |||||||||||||||||||||||||||||||    
T  39901582 agattacctttaaagaatggtgggtaactta 39901612  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 29938987 - 29938945
Alignment:
Q  173 gtgtctttattggtgttttgtttataggtgttccgcttatata 215  Q
    |||||||| |||||||||||||| |||||||||||| ||||||    
T  29938987 gtgtctttgttggtgttttgtttttaggtgttccgcctatata 29938945  T

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