View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1291_low_54 (Length: 306)
Name: NF1291_low_54
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1291_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 55 - 249
Target Start/End: Original strand, 39115273 - 39115481
Alignment:
| Q |
55 |
agcagagatgagtggttgtggtttaggactgtggttgaacattagcttattaattattcattaggttgcattatatttgtcaccatgggccattcacttc |
154 |
Q |
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| T |
39115273 |
agcaaagatgagtggttgtggtttaggactgtggttgaacattagcttattaattattcattaggttgcattatatttgtcaccatgggccattcacttc |
39115372 |
T |
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| Q |
155 |
acatttgt--------------ataatgtgacagtagatctctatattagaccactataggctagcaatggacttccacttgtgtgcaactttgtctttg |
240 |
Q |
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| T |
39115373 |
acatttgtataatttgatttgaataatgtgacagtagatctctatattagaccactataggctagcaatggacttccacttgtgtgcaactttgtctttg |
39115472 |
T |
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| Q |
241 |
gtgtctgtg |
249 |
Q |
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||||||||| |
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| T |
39115473 |
gtgtctgtg |
39115481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 157 - 249
Target Start/End: Complemental strand, 38617217 - 38617125
Alignment:
| Q |
157 |
atttgtataatgtgacagtagatctctatattagaccactataggctagcaatggacttccacttgtgtgcaactttgtctttggtgtctgtg |
249 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
38617217 |
atttgaataatgtgaaagtagatctctatattagaccactataggctagcaatggacttccacttgagtgcaactttgtctttcgtgtctgtg |
38617125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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