View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1291_low_58 (Length: 300)
Name: NF1291_low_58
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1291_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 12790178 - 12790369
Alignment:
| Q |
1 |
tcaattttctaatacgaaacaatcatttatttcttaatatggtggggtagcttgtggaagcaaagatgggatcaggttgattaataaggaaaggtaggtt |
100 |
Q |
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| T |
12790178 |
tcaattttctaatatgaaacaatcatttatttcttaatatggtggggtagcttggggaagcaa-gatgggatcaggttgattaataaggaaaggtaggtt |
12790276 |
T |
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| Q |
101 |
tgtgtcattgctttctatcttagctaaaaaagatggtcaaatccaaatccaatccttttccttgaatttacctcaattatgtatcactacttt |
193 |
Q |
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| T |
12790277 |
tgtgtcattgctttctatcttagctaaaaaagatagtcaaatccaaatccaatccttttccttgaatttacctcaattatgtatcactacttt |
12790369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 30 - 231
Target Start/End: Original strand, 12771431 - 12771632
Alignment:
| Q |
30 |
tttcttaatatggtggggtagcttgtggaagcaaagatgggatcaggttgattaataaggaaaggtaggtttgtgtcattgctttc-tatcttagctaaa |
128 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| | |||| |||||| |
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| T |
12771431 |
tttcttaatatggtggggtagcttgtagaagcaa-gatgggatcaggttgattaataaggaaaggtaggtttgtgtctttgctttcctctctttgctaaa |
12771529 |
T |
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| Q |
129 |
aaagatggtcaaatccaaatccaatccttttccttgaatttacctcaattatgtatcactacttttgggggtgcttagtttctactttcattttattcct |
228 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
12771530 |
aaagatagtcaaatccaaatccaatccttttccttgaatttacctcaattatgtatcactacttttgggggtgcttagtttctactttcttttgattcct |
12771629 |
T |
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| Q |
229 |
taa |
231 |
Q |
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||| |
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| T |
12771630 |
taa |
12771632 |
T |
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