View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1291_low_6 (Length: 874)
Name: NF1291_low_6
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1291_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 8 - 355
Target Start/End: Complemental strand, 39670374 - 39670031
Alignment:
| Q |
8 |
caccacagagcatgaaagagacccacggcttacctcacatccacattacaacgaggatataaccataaagnnnnnnnnnnnnnnnnnaataatacagttt |
107 |
Q |
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| T |
39670374 |
caccagagagcatgaaagagacccacggcttacctcacatccacattacaacgaggatataaccataaagtttttttttttttttt-aataatacagttt |
39670276 |
T |
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| Q |
108 |
aagatttttatatattaatcttaaaagtgtttcaagtaaattcaagtgttaaaattttaaaggttaattattaataaaatggataatccatgcacaaaca |
207 |
Q |
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| T |
39670275 |
aagatttttatatattaatcttaaaagtgtttcaagtaaattcaagtgttaaaattttaaaggttaattattaataaaatggataatccatgcacaaaca |
39670176 |
T |
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| Q |
208 |
aatccattcacataagcacttagaaaattaattaatatagttctattttgataaaccatacaaattttatctataacttcccatattctggtcactattt |
307 |
Q |
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| T |
39670175 |
aatccattcacataagcacttagaaaattaattaatatagttctattttgataaaccatacaaattttatct---acttcccatattctggtcactattt |
39670079 |
T |
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| Q |
308 |
caatctcaatgcaaaattattattatcagggtcatgcctccaagattt |
355 |
Q |
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| T |
39670078 |
caatctcaatgcaaaattattattatcagggtcatgcctccaagattt |
39670031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 533 - 789
Target Start/End: Complemental strand, 39664854 - 39664602
Alignment:
| Q |
533 |
ctcatcagcattaaattacagtatttggaaatacatttcctcctttattctcagacttatcagttttt-cacatctagtctagggttagggcttggcaaa |
631 |
Q |
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| T |
39664854 |
ctcatcagcattaaattacagtatttggaaatacatttcctcctttattctcggacttatcagttttttcacatctag-----ggttagggcttggcaaa |
39664760 |
T |
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| Q |
632 |
aacaggcccaatccaacccactaagtctaaaccgtcattttctatatagatagcattggacaagcagaaaaccctaggaaataaacctagtgatcacggc |
731 |
Q |
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| T |
39664759 |
aacaggcccaatccaacccactaagtctaaaccgtcattttatatatagatagcattggacaagcagaaaaccctaggaaataaacctagtgatcacggc |
39664660 |
T |
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| Q |
732 |
agttccagaacagtttttgtatcatgtcggaggaagaaatacgtaaggttcatgtggt |
789 |
Q |
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| T |
39664659 |
agttccagaacagtttttgtatcatgtcggaggaagaaatacgtaaggcttatgtggt |
39664602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 353 - 532
Target Start/End: Complemental strand, 39665074 - 39664895
Alignment:
| Q |
353 |
tttattcaaaaggagtaaagctaattttattcacacaaataataacaaccatgaattctctgcgatgctctaaaacaaaaatcacacaagttaagccagg |
452 |
Q |
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| T |
39665074 |
tttattcaaaaggagtaaagctaattttattcacacaaataataacaaccacgaattctctgcgatgctctaaaacaaaaatcacacaagttaagccagg |
39664975 |
T |
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| Q |
453 |
attatctaactgaaacaggattatcaggtgagtttgaaatataccccataatctattttttgagccgtgttattattggt |
532 |
Q |
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| T |
39664974 |
attatctaaccgaaacaggattatcaggtgagtttgaaatataccccataatctattttttgagccgtgttattattggt |
39664895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 28714814 - 28714744
Alignment:
| Q |
96 |
ataatacagtttaagatttttatatattaatcttaaaagtgtttcaagtaaattcaagtgttaaaattttaa |
167 |
Q |
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| T |
28714814 |
ataatatagtttaaaacttttatgtattaatcttgaa-gtatttcaagtaaattcaagtgttaacattttaa |
28714744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 409 - 443
Target Start/End: Complemental strand, 39658307 - 39658273
Alignment:
| Q |
409 |
tctctgcgatgctctaaaacaaaaatcacacaagt |
443 |
Q |
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| T |
39658307 |
tctctgccatgctctaaaacaaaaatcacacaagt |
39658273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 37424209 - 37424280
Alignment:
| Q |
96 |
ataatacagtttaagatttttatatattaatcttaaaagtgtttcaagtaaattcaagtgttaaaattttaaa |
168 |
Q |
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| T |
37424209 |
ataatatagtttaagacttttatatagtaatcttaaaa-tgtttcaagtaaattcaagtgttagcattttaaa |
37424280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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