View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1291_low_71 (Length: 273)
Name: NF1291_low_71
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1291_low_71 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0036 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 273
Target Start/End: Original strand, 12789619 - 12789884
Alignment:
| Q |
8 |
caccacagagaacaccgtaaccatctcaaaaacatgaaactagaccctgacttccgaactcaaagcaaaaacgatcgacacgccagaatctagactacaa |
107 |
Q |
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| T |
12789619 |
caccagagagaacactgtaaccatctcaaaaacatgaaactagaccctgacttccaaactcaaagcaaaaacgatctgtccaccagaatctagactacaa |
12789718 |
T |
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| Q |
108 |
atccctaagacatgtacagtaaacgggtgtccgacacttacaatttaaacacccaaaataatggtttgtcctctataacctttaaataatgacatttgaa |
207 |
Q |
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| T |
12789719 |
atccctaagacatgtacagtaaacgggtgtccgacacttacaatttaaacacccaaaataatggtttgtcctctataacctttaaataatgacatttgaa |
12789818 |
T |
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| Q |
208 |
ttgtagtgagccaatgcacctgtagcagttatatacaattttaaataacaatcaaatgcatattat |
273 |
Q |
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| T |
12789819 |
ttgtagtgagccaatgtacctgtagcagttatatacaattttaaataacaatcaaatgcatattat |
12789884 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 15841032 - 15841092
Alignment:
| Q |
18 |
aacaccgtaaccatctcaaaaacatgaaactagaccctgacttccgaactcaaagcaaaaa |
78 |
Q |
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| T |
15841032 |
aacaccttaaccatcacaaaaacttgaaactagacgctaacttccgatctcgaagcaaaaa |
15841092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 64413 - 64480
Alignment:
| Q |
19 |
acaccgtaaccatctcaaaaacatgaaactagaccctgacttccgaactcaaagcaaaaacgatcgac |
86 |
Q |
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| T |
64413 |
acaccttaaccatccaaaaaacatgaaactagacgtcaacttccgatctcaaagcaaaagcgatcgac |
64480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 69554 - 69621
Alignment:
| Q |
19 |
acaccgtaaccatctcaaaaacatgaaactagaccctgacttccgaactcaaagcaaaaacgatcgac |
86 |
Q |
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| T |
69554 |
acaccttaaccatccaaaaaacatgaaactagacgtcaacttccgatctcaaagcaaaagcgatcgac |
69621 |
T |
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