View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1291_low_73 (Length: 271)
Name: NF1291_low_73
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1291_low_73 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 59 - 257
Target Start/End: Original strand, 1676436 - 1676634
Alignment:
| Q |
59 |
cacagacaaatcgttgaaatgggactcactttactgtctcatgcttctatccctcttaagttttgggaccacagttttactcaagctgtttctctcatca |
158 |
Q |
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| T |
1676436 |
cacagacaaatcgttgaaatgggactcactttactgtctcatgcttctatccctcttaagttttgggaccacaattttactcaagctgtttctctcatca |
1676535 |
T |
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| Q |
159 |
ataagcttccctcatctgccataccccaattctattctcctcaccatgcactatttcatactattcctgactatactaatctcaaaatatttggctgtc |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||| |
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| T |
1676536 |
ataagcttccctcatctgccataccccaattctattctcctcaccatgcactatttcatattattcctgactatactaatctcaaagtgtttggctgtc |
1676634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 59 - 257
Target Start/End: Original strand, 45495676 - 45495864
Alignment:
| Q |
59 |
cacagacaaatcgttgaaatgggactcactttactgtctcatgcttctatccctcttaagttttgggaccacagttttactcaagctgtttctctcatca |
158 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45495676 |
cacagacaaatcgttgaaatgggactcactttactgtctcatgcttctatccctcttaagttttgggaccacagttttactcaagctgtttctctcatca |
45495775 |
T |
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| Q |
159 |
ataagcttccctcatctgccataccccaattctattctcctcaccatgcactatttcatactattcctgactatactaatctcaaaatatttggctgtc |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||| |
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| T |
45495776 |
ataagcttccctcatctgccataccccaattctattctcctcaccatgc----------actattcctgactatactaatctcaaagtgtttggctgtc |
45495864 |
T |
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