View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1291_low_74 (Length: 266)

Name: NF1291_low_74
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1291_low_74
NF1291_low_74
[»] chr2 (34 HSPs)
chr2 (16-162)||(32766217-32766364)
chr2 (16-162)||(31091506-31091652)
chr2 (16-158)||(32764940-32765081)
chr2 (16-162)||(21733750-21733899)
chr2 (19-159)||(31090165-31090305)
chr2 (16-114)||(14704052-14704149)
chr2 (16-162)||(17330209-17330355)
chr2 (23-161)||(24459432-24459570)
chr2 (16-157)||(34037652-34037793)
chr2 (16-158)||(2910102-2910244)
chr2 (18-159)||(40000315-40000456)
chr2 (16-162)||(24458058-24458204)
chr2 (18-162)||(39016364-39016506)
chr2 (23-162)||(5914978-5915117)
chr2 (16-139)||(17466807-17466930)
chr2 (16-161)||(7073638-7073783)
chr2 (18-162)||(2911468-2911616)
chr2 (26-153)||(38853762-38853889)
chr2 (18-128)||(33161799-33161909)
chr2 (23-140)||(5914324-5914441)
chr2 (19-128)||(7412124-7412233)
chr2 (16-108)||(17466093-17466185)
chr2 (31-158)||(34582664-34582791)
chr2 (19-113)||(37607149-37607243)
chr2 (16-162)||(39015003-39015149)
chr2 (16-99)||(38984967-38985051)
chr2 (16-162)||(31814323-31814467)
chr2 (50-167)||(8420006-8420123)
chr2 (26-158)||(38854791-38854923)
chr2 (26-158)||(31443234-31443365)
chr2 (16-91)||(39999022-39999096)
chr2 (19-73)||(10728990-10729044)
chr2 (27-73)||(26586285-26586331)
chr2 (49-110)||(12746213-12746274)
[»] chr8 (22 HSPs)
chr8 (16-162)||(32898424-32898570)
chr8 (16-162)||(35177393-35177539)
chr8 (16-162)||(35178784-35178929)
chr8 (16-161)||(10407563-10407708)
chr8 (16-158)||(5738002-5738144)
chr8 (16-167)||(1952949-1953099)
chr8 (16-158)||(5965421-5965563)
chr8 (61-168)||(41753990-41754097)
chr8 (16-162)||(41754776-41754919)
chr8 (16-99)||(45476223-45476306)
chr8 (16-114)||(28619035-28619133)
chr8 (16-162)||(30134564-30134710)
chr8 (16-99)||(5736903-5736986)
chr8 (16-90)||(45476542-45476616)
chr8 (16-158)||(59554-59696)
chr8 (16-97)||(10406269-10406350)
chr8 (16-108)||(28524810-28524902)
chr8 (26-158)||(43539107-43539239)
chr8 (25-92)||(32565696-32565763)
chr8 (55-109)||(41121160-41121214)
chr8 (49-114)||(12637770-12637835)
chr8 (16-68)||(41122730-41122782)
[»] chr1 (31 HSPs)
chr1 (18-162)||(10332984-10333128)
chr1 (16-162)||(9339644-9339790)
chr1 (16-162)||(32665749-32665895)
chr1 (16-162)||(7945533-7945679)
chr1 (16-162)||(10333165-10333311)
chr1 (21-161)||(7944156-7944294)
chr1 (23-162)||(5782412-5782551)
chr1 (16-159)||(6612420-6612563)
chr1 (16-162)||(9341004-9341150)
chr1 (16-162)||(22856678-22856824)
chr1 (16-162)||(52440539-52440684)
chr1 (16-162)||(52439477-52439619)
chr1 (18-158)||(8975161-8975301)
chr1 (17-161)||(34088449-34088585)
chr1 (16-77)||(22857558-22857619)
chr1 (16-109)||(6613957-6614051)
chr1 (19-109)||(50107185-50107275)
chr1 (52-162)||(3117647-3117757)
chr1 (19-158)||(11060766-11060905)
chr1 (16-79)||(32664585-32664647)
chr1 (23-133)||(5783095-5783205)
chr1 (51-113)||(25037925-25037987)
chr1 (51-113)||(25043137-25043199)
chr1 (58-150)||(44019996-44020088)
chr1 (19-130)||(11829939-11830050)
chr1 (16-158)||(1407642-1407784)
chr1 (16-77)||(534518-534579)
chr1 (16-65)||(33342511-33342560)
chr1 (50-150)||(1001164-1001264)
chr1 (102-162)||(2923861-2923921)
chr1 (164-216)||(12173238-12173290)
[»] chr5 (34 HSPs)
chr5 (16-163)||(4592858-4593005)
chr5 (90-242)||(13651173-13651324)
chr5 (16-162)||(2464667-2464813)
chr5 (16-162)||(8074449-8074594)
chr5 (18-162)||(546017-546160)
chr5 (16-162)||(9538028-9538174)
chr5 (16-162)||(21069287-21069433)
chr5 (16-161)||(19182949-19183094)
chr5 (16-167)||(28591092-28591244)
chr5 (17-162)||(2466753-2466899)
chr5 (16-162)||(14891126-14891268)
chr5 (16-128)||(32641705-32641817)
chr5 (18-162)||(40612640-40612784)
chr5 (16-162)||(25590429-25590574)
chr5 (16-161)||(19186199-19186344)
chr5 (16-159)||(9537024-9537166)
chr5 (23-162)||(16611726-16611865)
chr5 (16-123)||(32640325-32640432)
chr5 (16-162)||(8075812-8075958)
chr5 (16-123)||(544685-544792)
chr5 (16-158)||(31947016-31947158)
chr5 (26-127)||(19271375-19271476)
chr5 (16-156)||(16978996-16979136)
chr5 (66-158)||(18400192-18400284)
chr5 (16-120)||(28589739-28589843)
chr5 (54-152)||(13483029-13483126)
chr5 (51-97)||(14881010-14881056)
chr5 (16-112)||(4594080-4594174)
chr5 (55-99)||(13483174-13483218)
chr5 (17-109)||(35538281-35538373)
chr5 (21-100)||(18004698-18004777)
chr5 (19-158)||(26327054-26327193)
chr5 (116-162)||(24900411-24900457)
chr5 (16-70)||(40611350-40611404)
[»] chr7 (43 HSPs)
chr7 (16-161)||(44333138-44333281)
chr7 (16-165)||(48646044-48646193)
chr7 (16-162)||(48777254-48777401)
chr7 (16-162)||(7258273-7258419)
chr7 (16-162)||(44334429-44334574)
chr7 (16-158)||(7259663-7259805)
chr7 (16-158)||(43457459-43457601)
chr7 (16-162)||(48788651-48788797)
chr7 (18-159)||(46286504-46286645)
chr7 (18-162)||(48647424-48647568)
chr7 (16-167)||(10899052-10899203)
chr7 (16-162)||(35727697-35727842)
chr7 (16-162)||(42477379-42477524)
chr7 (16-159)||(30924988-30925130)
chr7 (16-162)||(35729065-35729211)
chr7 (19-130)||(34888905-34889016)
chr7 (23-157)||(8375569-8375703)
chr7 (16-158)||(12223678-12223820)
chr7 (16-162)||(39708101-39708247)
chr7 (16-109)||(13578300-13578392)
chr7 (16-162)||(8048763-8048909)
chr7 (38-148)||(8374926-8375036)
chr7 (52-162)||(45583682-45583792)
chr7 (16-107)||(45584475-45584566)
chr7 (16-161)||(19433913-19434058)
chr7 (16-172)||(12220011-12220166)
chr7 (16-112)||(44529076-44529172)
chr7 (16-162)||(5930112-5930257)
chr7 (21-113)||(44530595-44530687)
chr7 (16-100)||(32793231-32793315)
chr7 (88-158)||(385662-385732)
chr7 (60-158)||(34704911-34705009)
chr7 (19-128)||(2677768-2677877)
chr7 (61-119)||(10894391-10894449)
chr7 (81-158)||(21062819-21062896)
chr7 (18-79)||(46287385-46287446)
chr7 (16-128)||(7509450-7509562)
chr7 (26-110)||(8879532-8879616)
chr7 (21-73)||(24287567-24287619)
chr7 (16-71)||(33060899-33060954)
chr7 (164-202)||(33474296-33474334)
chr7 (32-114)||(33607618-33607700)
chr7 (16-73)||(30917800-30917857)
[»] chr3 (35 HSPs)
chr3 (16-161)||(48572984-48573129)
chr3 (16-168)||(36278944-36279096)
chr3 (35-162)||(17700516-17700643)
chr3 (16-167)||(55388066-55388217)
chr3 (35-158)||(17701917-17702040)
chr3 (16-162)||(52316977-52317123)
chr3 (17-162)||(52318297-52318442)
chr3 (50-162)||(19114531-19114643)
chr3 (16-160)||(20464069-20464213)
chr3 (23-162)||(33428421-33428560)
chr3 (23-162)||(47118037-47118176)
chr3 (23-165)||(45600925-45601066)
chr3 (49-162)||(2592019-2592132)
chr3 (16-121)||(36280296-36280401)
chr3 (18-162)||(2591625-2591769)
chr3 (16-123)||(53959079-53959186)
chr3 (16-162)||(3671037-3671182)
chr3 (16-162)||(34263803-34263949)
chr3 (16-114)||(48574438-48574536)
chr3 (16-157)||(50753820-50753961)
chr3 (21-162)||(48808362-48808505)
chr3 (16-160)||(55389448-55389592)
chr3 (23-162)||(47075337-47075476)
chr3 (39-128)||(11773053-11773142)
chr3 (23-162)||(19115133-19115271)
chr3 (50-167)||(49261550-49261664)
chr3 (16-162)||(53957673-53957817)
chr3 (26-108)||(40205934-40206016)
chr3 (85-151)||(19331117-19331183)
chr3 (19-108)||(40206919-40207009)
chr3 (61-135)||(47427885-47427959)
chr3 (16-73)||(48809634-48809690)
chr3 (15-158)||(26652583-26652725)
chr3 (16-71)||(36827454-36827509)
chr3 (16-144)||(612230-612358)
[»] chr4 (25 HSPs)
chr4 (23-162)||(53771035-53771174)
chr4 (16-162)||(42278047-42278193)
chr4 (16-161)||(47878463-47878608)
chr4 (19-158)||(47874566-47874704)
chr4 (16-162)||(31844720-31844865)
chr4 (26-157)||(26172931-26173062)
chr4 (23-162)||(48740006-48740145)
chr4 (16-162)||(26170638-26170784)
chr4 (16-168)||(39868914-39869064)
chr4 (53-162)||(54574423-54574532)
chr4 (16-162)||(4703196-4703342)
chr4 (16-114)||(50694795-50694893)
chr4 (16-144)||(21623096-21623224)
chr4 (23-163)||(53770330-53770470)
chr4 (18-108)||(4701817-4701907)
chr4 (16-114)||(21621869-21621967)
chr4 (16-162)||(31844934-31845080)
chr4 (19-152)||(42391868-42392003)
chr4 (23-148)||(26685408-26685528)
chr4 (26-162)||(44158502-44158638)
chr4 (59-162)||(19051253-19051356)
chr4 (16-101)||(19050297-19050382)
chr4 (54-113)||(54574822-54574881)
chr4 (19-73)||(32244361-32244415)
chr4 (16-73)||(24753540-24753597)
[»] scaffold0039 (3 HSPs)
scaffold0039 (16-160)||(79073-79217)
scaffold0039 (16-162)||(79662-79808)
scaffold0039 (81-157)||(74357-74433)
[»] scaffold0034 (1 HSPs)
scaffold0034 (49-161)||(116054-116166)
[»] chr6 (9 HSPs)
chr6 (16-162)||(30747997-30748143)
chr6 (23-162)||(31218953-31219092)
chr6 (23-158)||(31219146-31219281)
chr6 (16-162)||(23507947-23508092)
chr6 (26-158)||(12676459-12676591)
chr6 (19-133)||(24621104-24621218)
chr6 (88-139)||(6468832-6468883)
chr6 (163-208)||(19645948-19645993)
chr6 (16-64)||(10855902-10855950)
[»] scaffold0767 (1 HSPs)
scaffold0767 (17-158)||(5601-5742)


Alignment Details
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 32766217 - 32766364
Alignment:
Q  16 acatcatcacttaacataatttttt-aacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacc 114  Q
    |||||||||||||||| | |||||| |||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||    
T  32766217 acatcatcacttaacagattttttttaacgtcaaggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacc 32766316  T
Q  115 catgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
     ||||||||||||| |||| |||||||||| |||||||||||||||||    
T  32766317 tatgtgacaacgaggtgcagagtcagggaccaaagtgactatttgctc 32766364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 31091506 - 31091652
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||||| |||||||||| ||  |||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||     
T  31091506 acatcatcacttaacatatttttttaacgtcagagactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacct 31091605  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||||||| | || |||| |||||||||| |||||||||||||||||    
T  31091606 atgtgacagcaaggtgcagagtcagggaccaaagtgactatttgctc 31091652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 32765081 - 32764940
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||||| |||||||||| || ||| ||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||| ||||     
T  32765081 acatcatcacttaacata-ttttttaacgtcagggattaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagagacct 32764983  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactattt 158  Q
    || ||||||| || |||| | ||||||||||||||||||||||    
T  32764982 atatgacaactagctgcagaatcagggactaaagtgactattt 32764940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 21733750 - 21733899
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatc---atgagtcaggga 112  Q
    |||||||||||||||| ||||||||||| ||||  ||||||||||| ||||||||||| ||| || |||||||||||||||||||   ||||||||||||    
T  21733750 acatcatcacttaacagaattttttaactgcaacaactaaagtgatgacggaagtgcagagtcagagacttatttgtatttaatcatgatgagtcaggga 21733849  T
Q  113 cccatgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    ||  |||||||||||  | || |||||||||||| |||||||||||||||    
T  21733850 cctttgtgacaacgatgtacaaagtcagggactagagtgactatttgctc 21733899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 31090305 - 31090165
Alignment:
Q  19 tcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatg 118  Q
    ||||||||||||||| |||||||||| || |||||||| | |||||||||||||| ||| || ||||||||| ||||||||| ||||||| ||||| |||    
T  31090305 tcatcacttaacatatttttttaacgtcagggactaaaatcataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaaggacctatg 31090206  T
Q  119 tgacaacgagatgcacagtcagggactaaagtgactatttg 159  Q
    ||||| |||| |||| | |||||||||||| ||||||||||    
T  31090205 tgacagcgagctgcagaatcagggactaaattgactatttg 31090165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 14704149 - 14704052
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacc 114  Q
    |||||||||||||||||| |||||||||| || ||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||    
T  14704149 acatcatcacttaacata-ttttttaacgtcagggactaaagtgataacggaagtgcagagtgagggacttatttgtatttaatcctgagtcagggacc 14704052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 17330209 - 17330355
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| |||   |||||| || |||||||||||||||||||| |||| ||| || ||||||||||||||||||| |||||||||||||     
T  17330209 acatcatcacttaacagaataacttaacgtcatggactaaagtgataacggaaatgcagagtcagagacttatttgtatttaatcctgagtcagggacct 17330308  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    ||||||||  ||| |||| | ||| ||||||||| ||||||||||||    
T  17330309 atgtgacagtgagctgcagaatcaaggactaaagcgactatttgctc 17330355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 161
Target Start/End: Original strand, 24459432 - 24459570
Alignment:
Q  23 cacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgac 122  Q
    ||||||||||| |||||||| | || |||||||||||||||  ||||||||  || || ||||||||||||||||||| ||| ||||||||| |||||||    
T  24459432 cacttaacatatttttttaatgtcagggactaaagtgataatagaagtgcagggtcagagacttatttgtatttaatcctgattcagggacctatgtgac 24459531  T
Q  123 aacgagatgcacagtcagggactaaagtgactatttgct 161  Q
    | ||||||||| |||||||||| ||||||||| ||||||    
T  24459532 agcgagatgcagagtcagggaccaaagtgactctttgct 24459570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 34037652 - 34037793
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||||||||||||||||||  | |||||||||||||| |||||||| ||| |  ||||||||||||||||||| ||||| | |||||     
T  34037652 acatcatcacttaacataattttttaacggcgggaactaaagtgataacagaagtgcagagtcatagacttatttgtatttaatcctgagttatggacct 34037751  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatt 157  Q
     | ||||| | || |||| ||||| |||||||||||||||||    
T  34037752 ttatgacagcaaggtgcagagtcaaggactaaagtgactatt 34037793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 2910244 - 2910102
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | |||||||||| || |||||||||||| || ||||||||| ||| || |||||||||||||||||||  |||||||||| |     
T  2910244 acatcatcacttaacagatttttttaacgtcagggactaaagtgacaaaggaagtgcagagtcagagacttatttgtatttaatcccgagtcagggatct 2910145  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactattt 158  Q
    |||||||| |||| |||| | |||  ||||||||||| |||||    
T  2910144 atgtgacagcgagctgcaaaatcaaagactaaagtgattattt 2910102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 40000315 - 40000456
Alignment:
Q  18 atcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccat 117  Q
    |||||||||||||| | ||| |||||| || ||| |||||||||||||||||||||  ||||| ||||||||||||||||||| | | ||||||| | ||    
T  40000315 atcatcacttaacagattttcttaacgtcagggaataaagtgataacggaagtgcagggttagagacttatttgtatttaatcctcaatcagggatctat 40000414  T
Q  118 gtgacaacgagatgcacagtcagggactaaagtgactatttg 159  Q
    || ||| |||| |||| |||||||||| |||||||| |||||    
T  40000415 gtaacagcgaggtgcagagtcagggaccaaagtgacaatttg 40000456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 24458204 - 24458058
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||| ||||||||| | | ||||||||||  |  |||||||||||||||| ||||| | ||| ||  |||||||||||||||||  |||||||||||||     
T  24458204 acattatcacttaatagatttttttaacgttagagactaaagtgataacgaaagtgtagagtcagaaacttatttgtatttaattttgagtcagggacct 24458105  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||||| | |||| |||| | ||||||||||||||||||||||||||    
T  24458104 atgtgatagcgagctgcataatcagggactaaagtgactatttgctc 24458058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 39016364 - 39016506
Alignment:
Q  18 atcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtc--agggaccc 115  Q
    |||||||||||||||| |||||||||| ||  |||||||||||||||||||||||| |||    ||||||||||||||||||| ||||||  || ||       
T  39016364 atcatcacttaacatatttttttaacgtcagagactaaagtgataacggaagtgcagagt----gacttatttgtatttaatcctgagtcagagagatgt 39016459  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||||||| |||| |||| | |||| |||||||||||||||||||||    
T  39016460 atgtgacagcgagctgcagaatcagagactaaagtgactatttgctc 39016506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 5914978 - 5915117
Alignment:
Q  23 cacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgac 122  Q
    ||||||||| |||| ||||||| |  ||| ||| ||||||||||||||||| |||||| ||||| ||||||||||||  |||||||  |||| || |||     
T  5914978 cacttaacagaattatttaacgtcggggattaaggtgataacggaagtgcagagttagtgacttctttgtatttaattctgagtcaaagacctatttgaa 5915077  T
Q  123 aacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    | |||| |||| ||||| ||||||||||||||||||||||    
T  5915078 agcgaggtgcagagtcatggactaaagtgactatttgctc 5915117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 17466807 - 17466930
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| |||| ||||||| |   |||||||||||||||||||||||| ||| || ||||| ||||||||||||| |||||||| | |      
T  17466807 acatcatcacttaacagaattatttaacgtcttagactaaagtgataacggaagtgcagagtcagagacttctttgtatttaatcctgagtcagcggctt 17466906  T
Q  116 atgtgacaacgagatgcacagtca 139  Q
    |||||||| |||| |||| |||||    
T  17466907 atgtgacagcgaggtgcagagtca 17466930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 7073783 - 7073638
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| |||   |||||| || ||||||||||||||||||||||||| | | || |||||||||||||||||||  || |||| ||||     
T  7073783 acatcatcacttaacagaataacttaacgtcagggactaaagtgataacggaagtgcagaatcagagacttatttgtatttaatcccgaatcagagacct 7073684  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgct 161  Q
    ||| ||||   || |||| | | | |||||||||||||||||||||    
T  7073683 atgcgacagtaagctgcagaatgaaggactaaagtgactatttgct 7073638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 2911468 - 2911616
Alignment:
Q  18 atcatcacttaacataattttttaacggcaaggacta----aagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggac 113  Q
    |||||||||||||| | |||||||||| || ||||||    ||||||||||||||||||||||| || ||||||||| |||||||   ||||||| || |    
T  2911468 atcatcacttaacagatttttttaacgtcagggactaactaaagtgataacggaagtgcaaagtcagagacttatttatatttaactttgagtcatggcc 2911567  T
Q  114 ccatgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
      |||||||| |||| |||| |  ||| ||| |||||||||||||||||    
T  2911568 ttatgtgacagcgagctgcagaaccagagaccaaagtgactatttgctc 2911616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 38853889 - 38853762
Alignment:
Q  26 ttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgacaac 125  Q
    ||||||||||| ||||||| ||  ||||||| |||||||||||||||| | |||||||||  ||||||||||||| |||||||| ||||  | ||||||     
T  38853889 ttaacataattatttaacgtcagtgactaaattgataacggaagtgcacatttagggactactttgtatttaatcctgagtcagagacctttatgacaat 38853790  T
Q  126 gagatgcacagtcagggactaaagtgac 153  Q
    ||  || | |||||||||| ||||||||    
T  38853789 gaagtgtagagtcagggaccaaagtgac 38853762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 33161909 - 33161799
Alignment:
Q  18 atcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccat 117  Q
    |||||||||||||| |||| ||||||| ||||||||||||||||||||||||| || |||  | ||||| |||| |||||||| | || ||| ||||  |    
T  33161909 atcatcacttaacaaaattatttaacgtcaaggactaaagtgataacggaagtacatagtctgagacttctttgcatttaatcctaaggcagagaccttt 33161810  T
Q  118 gtgacaacgag 128  Q
    |||||||||||    
T  33161809 gtgacaacgag 33161799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 140
Target Start/End: Complemental strand, 5914441 - 5914324
Alignment:
Q  23 cacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgac 122  Q
    ||||||||| |||| ||||||| || || ||||||||||||||| |||||||||| |  ||||| ||||||||||||  |||||||| |||| || | ||    
T  5914441 cacttaacagaattatttaacgtcatggtctaaagtgataacgggagtgcaaagtcactgacttctttgtatttaattgtgagtcagagacctatatcac 5914342  T
Q  123 aacgagatgcacagtcag 140  Q
    |||||| |||| ||||||    
T  5914341 aacgaggtgcaaagtcag 5914324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 7412233 - 7412124
Alignment:
Q  19 tcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatg 118  Q
    |||||||||||||||||| ||||| |  | |||||||||||||||||||||||||   | || ||||| ||| ||||||||| |||||||| || | |||    
T  7412233 tcatcacttaacataattatttaatgttagggactaaagtgataacggaagtgcactatcagtgacttctttatatttaatcttgagtcagagatctatg 7412134  T
Q  119 tgacaacgag 128  Q
    ||||||||||    
T  7412133 tgacaacgag 7412124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 17466185 - 17466093
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtca 108  Q
    ||||||||||||||||||||| ||| ||| || |||||||||||| |||||||||||| ||| || ||  | ||||||||||||| |||||||    
T  17466185 acatcatcacttaacataattgtttcacgtcagggactaaagtgaaaacggaagtgcagagtcagagatatctttgtatttaatcctgagtca 17466093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 158
Target Start/End: Original strand, 34582664 - 34582791
Alignment:
Q  31 ataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgacaacgagat 130  Q
    |||||| ||||||| || ||||||||||||||||||||||||| | | |||||||  |||||||||||||  ||||||  ||||  ||| ||| | || |    
T  34582664 ataattatttaacgtcagggactaaagtgataacggaagtgcacattcagggactactttgtatttaatcccgagtcaatgacctttgtaacagcaaggt 34582763  T
Q  131 gcacagtcagggactaaagtgactattt 158  Q
    ||| ||||||||||||| ||||| ||||    
T  34582764 gcagagtcagggactaacgtgaccattt 34582791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 37607243 - 37607149
Alignment:
Q  19 tcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggac 113  Q
    |||||| ||||||||||| | ||||| || ||||||||||||||||||||||||| | | | |||||   |||||||||||||||||| ||||||    
T  37607243 tcatcagttaacataattatataacgtcagggactaaagtgataacggaagtgcacattaaaggactaccttgtatttaatcatgagttagggac 37607149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 39015149 - 39015003
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| |  |||||||||  |   |||||| |||||| | ||||||| ||| |  ||| ||||||||||||||| ||||||| ||| |     
T  39015149 acatcatcacttaacaaatatttttaacgttagaaactaaaatgataatgaaagtgcagagtcaaagacgtatttgtatttaatcctgagtcaaggatct 39015050  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    ||||| || |||| |||| |||||||||| ||||||| |||||||||    
T  39015049 atgtggcagcgaggtgcagagtcagggacaaaagtgattatttgctc 39015003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 38984967 - 38985051
Alignment:
Q  16 acatcatcacttaacataattt-tttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaat 99  Q
    |||||| ||||||||||||||| |||||||  |  |||||||||||||||||||||||| ||| | |||||| ||||||||||||    
T  38984967 acatcaacacttaacataatttatttaacgttagtgactaaagtgataacggaagtgcagagtcaaggacttctttgtatttaat 38985051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 31814323 - 31814467
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| |||| ||||| |  | ||||||||||||||||||||||||| ||| |   |||| ||| ||||||||  |||||||| ||||     
T  31814323 acatcatcacttaacagaattatttaatgctagggactaaagtgataacggaagtgcagagtcaaaaacttctttatatttaattctgagtcagagacc- 31814421  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
     | | ||| |||| |||| ||| |  |||||||||||||||||||||    
T  31814422 -tttaacagcgaggtgcagagtaaatgactaaagtgactatttgctc 31814467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 167
Target Start/End: Complemental strand, 8420123 - 8420006
Alignment:
Q  50 gactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgacaacgagatgcacagtcagggactaaag 149  Q
    ||||||| ||||||| |||||||| | | |||||||  ||||||||||||| ||| ||||||||   ||||||  ||| ||||| |||||||||| ||||    
T  8420123 gactaaactgataacagaagtgcacattcagggactactttgtatttaatcttgactcagggacatttgtgaccgcgaaatgcagagtcagggaccaaag 8420024  T
Q  150 tgactatttgctcctttt 167  Q
    |||| |||| ||| ||||    
T  8420023 tgaccatttactcatttt 8420006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 158
Target Start/End: Complemental strand, 38854923 - 38854791
Alignment:
Q  26 ttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgacaac 125  Q
    ||||||||||| ||||||  ||  ||||||| |||||||  ||||||| | ||||| |||  ||||||||||||| |||||||  ||||  | |||||||    
T  38854923 ttaacataattatttaacttcagtgactaaattgataacataagtgcacatttaggaactactttgtatttaatcctgagtcaaagacctttatgacaac 38854824  T
Q  126 gagatgcacagtcagggactaaagtgactattt 158  Q
    ||  || | |||||||||| |||||||||||||    
T  38854823 gaagtgtagagtcagggaccaaagtgactattt 38854791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 158
Target Start/End: Original strand, 31443234 - 31443365
Alignment:
Q  26 ttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgacaac 125  Q
    |||||| || ||||||| | ||| ||||||| |||||||  |||||||   | |||||||  |||||||||||| || |||||  |||   |||||||||    
T  31443234 ttaacaaaagtttttaaagtcaaagactaaactgataacataagtgcact-tcagggactactttgtatttaattataagtcaatgacttttgtgacaac 31443332  T
Q  126 gagatgcacagtcagggactaaagtgactattt 158  Q
    |||||||| |||||| |||||||||||| ||||    
T  31443333 gagatgcagagtcagagactaaagtgaccattt 31443365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 39999096 - 39999022
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttg 91  Q
    |||||||||||||||||| |||||||||| ||  || |||||||||||| | |||||||| | | |||||||||||    
T  39999096 acatcatcacttaacatatttttttaacgtcagagattaaagtgataaccg-agtgcaaaatcaaggacttatttg 39999022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 10729044 - 10728990
Alignment:
Q  19 tcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgca 73  Q
    |||||| ||||||||| ||||||||| || || ||||| ||||||||||||||||    
T  10729044 tcatcagttaacataagtttttaacgtcaggggctaaactgataacggaagtgca 10728990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 26586285 - 26586331
Alignment:
Q  27 taacataattttttaacggcaaggactaaagtgataacggaagtgca 73  Q
    |||||||||| ||||||| ||  ||||||||||||||||||||||||    
T  26586285 taacataattatttaacgccagagactaaagtgataacggaagtgca 26586331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 12746213 - 12746274
Alignment:
Q  49 ggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagg 110  Q
    ||||||||||||||||||||| ||| | | ||| |||  ||||||||||||| |||||||||    
T  12746213 ggactaaagtgataacggaagggcacattcaggaactactttgtatttaatcctgagtcagg 12746274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 32898424 - 32898570
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | |||||||||| || ||||||||||||||||||||||||| ||| |||||||||||||||||||||| | |||||||||||     
T  32898424 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctaagtcagggacct 32898523  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    ||||||||  ||| |||| ||||||||||||||||||||||||||||    
T  32898524 atgtgacagtgagttgcagagtcagggactaaagtgactatttgctc 32898570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 35177539 - 35177393
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | | |||||||| || ||||||||||||||||||||||||| ||| ||||||||||||||||||||||  ||||||||||||     
T  35177539 acatcatcacttaacagattattttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatccggagtcagggacct 35177440  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||||||| |||| |||| | | |||||||||| |||||||||||||    
T  35177439 atgtgacagcgagctgcagaattagggactaaattgactatttgctc 35177393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 35178784 - 35178929
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | |||||||||| || ||||||||||||||||||||||||| | | |||||||||||||||||||||| |||||||||||||     
T  35178784 acatcatcacttaacaga-ttttttaacgtcagggactaaagtgataacggaagtgcagaatcagggacttatttgtatttaatcctgagtcagggacca 35178882  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    || ||||| |||  |||| |||||||||| |||||||||||||||||    
T  35178883 atatgacagcgatgtgcagagtcagggaccaaagtgactatttgctc 35178929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 10407563 - 10407708
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | |||||||||| || | ||||||||||||||||||||||||||||| |||||||||||| ||||||| | |||||  ||||     
T  10407563 acatcatcacttaacagatttttttaacgtcaggaactaaagtgataacggaagtgcaaagttatggacttatttgtgtttaatcctaagtcaatgacct 10407662  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgct 161  Q
    ||||||||  ||| |||| | |||| ||||||||||||||||||||    
T  10407663 atgtgacagtgagctgcagaatcagagactaaagtgactatttgct 10407708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 5738002 - 5738144
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| |||| ||||||| ||| |||| |||||||||||||||| || ||| |   |||| ||||||||||||| ||||||| |||||     
T  5738002 acatcatcacttaacagaattatttaacgccaaagactgaagtgataacggaagtacagagtcaataacttctttgtatttaatcttgagtcatggacct 5738101  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactattt 158  Q
    |||| ||||||| ||||| ||||||| ||||||||||| ||||    
T  5738102 atgtcacaacgatatgcaaagtcaggaactaaagtgaccattt 5738144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 1952949 - 1953099
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | || ||||||| ||  ||||||||||||||||||||| || ||| |  ||||||||||||| ||||| | |||||| || |     
T  1952949 acatcatcacttaacagatttatttaacgtcagagactaaagtgataacggaagtacagagtcatagacttatttgtatgtaatcct-agtcagagatct 1953047  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctcctttt 167  Q
    || |||||||||| |||| | |||||||||||||||||||||| ||| ||||    
T  1953048 atatgacaacgagctgcagaatcagggactaaagtgactatttactcttttt 1953099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 5965421 - 5965563
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    ||||||| ||||||||||||  ||||||| ||  |||||||||||||||||||||||| ||| |  ||||| ||||||||||||| ||||||||||||      
T  5965421 acatcattacttaacataatcatttaacgtcagagactaaagtgataacggaagtgcagagtcaaagacttctttgtatttaatcctgagtcagggacat 5965520  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactattt 158  Q
     |||||||||||| || | | |||| |||| || |||||||||    
T  5965521 ttgtgacaacgaggtgtaaaatcagagactgaaatgactattt 5965563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 61 - 168
Target Start/End: Complemental strand, 41754097 - 41753990
Alignment:
Q  61 taacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgacaacgagatgcacagtcagggactaaagtgactatttgc 160  Q
    ||||| ||||| | ||| |||||||| ||| ||||||||| ||||||||||||| |||||||| | || |||| |  |||||||||||||||||||||||    
T  41754097 taacgaaagtgtagagtcagggacttgtttatatttaatcctgagtcagggacctatgtgacagcaaggtgcagaaccagggactaaagtgactatttgc 41753998  T
Q  161 tcctttta 168  Q
    ||||||||    
T  41753997 tcctttta 41753990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 41754776 - 41754919
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    ||||||||||||||||   ||||||||||||| || ||||||| |||||||||||| | ||| ||| |||| ||||||||||||| |||||||| || |     
T  41754776 acatcatcacttaacagt-ttttttaacggcaggg-ctaaagtaataacggaagtgtagagtcaggaacttgtttgtatttaatcctgagtcagagatct 41754873  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||||||| |||| |||| | ||| ||| ||||||||||||||||||    
T  41754874 atgtgacagcgaggtgcagaatca-ggattaaagtgactatttgctc 41754919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 45476306 - 45476223
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaat 99  Q
    |||||||||||||||| | ||||||||||| |  ||||||||||||||| |||||||| ||| || ||||||||||||||||||    
T  45476306 acatcatcacttaacagatttttttaacgggagagactaaagtgataacagaagtgcagagtcagagacttatttgtatttaat 45476223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 28619133 - 28619035
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacc 114  Q
    |||||||||||||||| |||| |||||||||   |||||||||||||||| ||||||| ||| |  || || |||||||||||||||| ||||||||||    
T  28619133 acatcatcacttaacaaaattatttaacggccgagactaaagtgataacgaaagtgcagagtcaatgatttctttgtatttaatcatgggtcagggacc 28619035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 30134710 - 30134564
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||| |||||||||| | |||||  |   | |||||||||||| |||||||| ||| |   |||| |||||||||||||||||||  ||||||     
T  30134710 acatcatcacctaacataattatataacgttagatattaaagtgataacagaagtgcagagtcacacacttctttgtatttaatcatgagtaggggacct 30134611  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
     ||||||| |||| |||| ||| | |||||||||||| |||||||||    
T  30134610 ttgtgacagcgaggtgcagagttaaggactaaagtgattatttgctc 30134564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 5736986 - 5736903
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaat 99  Q
    |||||||||||||||| |||| |||||||  | ||||||||||||||||| ||||| | |||||| || || ||||||||||||    
T  5736986 acatcatcacttaacaaaattatttaacgtgagggactaaagtgataacgaaagtgtagagttagagatttctttgtatttaat 5736903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 45476542 - 45476616
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttattt 90  Q
    |||||||||||||||||| |||||||||| ||  ||||||||||||||  |||||||| ||| || |||||||||    
T  45476542 acatcatcacttaacatatttttttaacgacagagactaaagtgataagagaagtgcagagtcagcgacttattt 45476616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 59696 - 59554
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    ||||||||  |||||||||||||||||  | |||||||||| |||| || ||  | |  | | |||||||  |||||| || ||| ||||||||||||      
T  59696 acatcatcggttaacataattttttaattgtaaggactaaactgatgacagatctacccattcagggactattttgtagtttatcctgagtcagggacta 59597  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactattt 158  Q
    | |||||| |||| || | ||||||||||||||||||||||||    
T  59596 aagtgacagcgaggtgtaaagtcagggactaaagtgactattt 59554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 10406350 - 10406269
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtattta 97  Q
    |||||||||||||||| | |||||||||  || |||||||||||||||  |||||||| ||| || ||||| ||| ||||||    
T  10406350 acatcatcacttaacagatttttttaacaccagggactaaagtgataatagaagtgcagagtcagagacttgtttttattta 10406269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 28524902 - 28524810
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtca 108  Q
    ||||||||| |||||| |||| ||||||| ||  ||||||| |||||||||||||||| | | | ||| |  ||||||||||||| |||||||    
T  28524902 acatcatcagttaacaaaattatttaacgtcagagactaaaatgataacggaagtgcacattcaaggattactttgtatttaatcctgagtca 28524810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 158
Target Start/End: Complemental strand, 43539239 - 43539107
Alignment:
Q  26 ttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgacaac 125  Q
    |||||| ||||||||||||| ||||| |||| ||||||| ||  | || | | |||||||  |||||| || ||| |||||| |||||  | |||||| |    
T  43539239 ttaacagaattttttaacggtaaggattaaactgataacagatatacacattcagggactattttgtagtttatcctgagtcggggactaaagtgacagc 43539140  T
Q  126 gagatgcacagtcagggactaaagtgactattt 158  Q
    ||| |||| ||| |||||| |||||||||||||    
T  43539139 gaggtgcaaagttagggaccaaagtgactattt 43539107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 32565696 - 32565763
Alignment:
Q  25 cttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgt 92  Q
    |||||||||||| |||||   ||| |||||||||||||||| ||||||||| || ||||||| |||||    
T  32565696 cttaacataattatttaatatcaatgactaaagtgataacgaaagtgcaaaatttgggacttctttgt 32565763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 41121214 - 41121160
Alignment:
Q  55 aagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcag 109  Q
    |||||||||  |||||||| ||| || ||||| ||||||||||||||||||||||    
T  41121214 aagtgataatagaagtgcatagtcagagacttctttgtatttaatcatgagtcag 41121160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 12637770 - 12637835
Alignment:
Q  49 ggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacc 114  Q
    ||||||||||||||||||||||||| | | ||| |||  |||||||| |||| ||||| |||||||    
T  12637770 ggactaaagtgataacggaagtgcacattcaggaactactttgtattcaatcctgagttagggacc 12637835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 41122730 - 41122782
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaa 68  Q
    ||||||||||||||||||||| ||||||| |||  |||||| |||||| ||||    
T  41122730 acatcatcacttaacataattatttaacgtcaaacactaaaatgataatggaa 41122782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 10333128 - 10332984
Alignment:
Q  18 atcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccat 117  Q
    |||||||||||||| | |||||||||| ||||||||||| |||||||||||||||| ||| |||||||||||| ||||||||| ||| ||| ||||| ||    
T  10333128 atcatcacttaacagatttttttaacgtcaaggactaaaatgataacggaagtgcagagtaagggacttatttatatttaatcctgaatcaaggacctat 10333029  T
Q  118 gtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||    
T  10333028 gtgacaacgaggtgcaaagtcagggactaaagtgactatttgctc 10332984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 9339790 - 9339644
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | |||||||||| || ||||||||||||||||||||||||| |||  |||| |||||||||||||||| |||||||||||||     
T  9339790 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcggggatttatttgtatttaatcctgagtcagggacct 9339691  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||| |||||||| |||| | ||||||||||||| ||||||||||||    
T  9339690 atgtaacaacgagctgcagaatcagggactaaagggactatttgctc 9339644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 32665749 - 32665895
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | |||| ||||| || ||||||||||||||||||||||||| ||| |  |||||||||||||||||||||||||||| ||||     
T  32665749 acatcatcacttaacagatttttgtaacgccagggactaaagtgataacggaagtgcagagtcaaagacttatttgtatttaatcatgagtcagagacct 32665848  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||||||| |||| |||| | ||||||||||||||||||||||||||    
T  32665849 atgtgacagcgagctgcagaatcagggactaaagtgactatttgctc 32665895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 7945533 - 7945679
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    ||||||||||||| |||| |||||||||| || ||||||||||||||||||||||||| ||| || ||||||||||||||||||| ||||||||| |||     
T  7945533 acatcatcacttagcatatttttttaacgtcagggactaaagtgataacggaagtgcatagtcagagacttatttgtatttaatcctgagtcaggaacct 7945632  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||||||| |||| |||| |||||||||| ||| ||| |||||||||    
T  7945633 atgtgacagcgaggtgcagagtcagggaccaaaatgattatttgctc 7945679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 10333165 - 10333311
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | ||||||||||  |  |||||||||||||||||||||||| ||| || ||||||||||||||||||| |||||||| ||||     
T  10333165 acatcatcacttaacagatttttttaacgctagagactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcttgagtcagagacct 10333264  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||| ||| |||| |||| | |||| || || |||||||||||||||    
T  10333265 atgtaacagcgagctgcagaatcagagattatagtgactatttgctc 10333311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 161
Target Start/End: Complemental strand, 7944294 - 7944156
Alignment:
Q  21 atcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtg 120  Q
    ||||||||||||| ||||||||||  | |||||||| |||||||| ||||||| ||| | |||||||||||||||||||  ||||||||||||| |||||    
T  7944294 atcacttaacatatttttttaacgttagggactaaattgataacgaaagtgcagagtcaaggacttatttgtatttaattttgagtcagggacctatgtg 7944195  T
Q  121 acaacgagatgcacagtcagggactaaagtgactatttgct 161  Q
    ||| |||| |||| | |||||||||  ||||||||||||||    
T  7944194 acagcgagttgcaaaatcagggact--agtgactatttgct 7944156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 5782551 - 5782412
Alignment:
Q  23 cacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgac 122  Q
    ||||||| | |||| ||||||| ||  |||||||||||||| ||||||||| | | || ||||| |||||||||||||||||||||| |||| |||||||    
T  5782551 cacttaataaaattatttaacgtcagagactaaagtgataagggaagtgcataatcagagacttctttgtatttaatcatgagtcagagacctatgtgac 5782452  T
Q  123 aacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    | |||| |||| |||||||||||||| |||| ||||||||    
T  5782451 agcgaggtgcagagtcagggactaaaatgacaatttgctc 5782412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 6612563 - 6612420
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||| ||||||||||| |||| ||||||| || ||| ||||||||||| ||||||||| ||| || ||||| |||||||||||||||||||||| |||      
T  6612563 acataatcacttaacaaaattatttaacgtcagggattaaagtgataatggaagtgcagagtcagagacttgtttgtatttaatcatgagtcagagacat 6612464  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttg 159  Q
     | | ||| |||| |||| |||||||||||||||||||||||||    
T  6612463 ttataacagcgaggtgcagagtcagggactaaagtgactatttg 6612420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 9341004 - 9341150
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||| | | |||||||||| ||  ||||||||||||||| |||||||||||| || ||||||||||||||||||| |||||||||||||     
T  9341004 acatcatcacttaatagatttttttaacgtcagagactaaagtgataacagaagtgcaaagtcagagacttatttgtatttaatcctgagtcagggacct 9341103  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||||| |  |||||||| | | |  ||  |||||||||||||||||    
T  9341104 atgtgatagtgagatgcagaataaatgatcaaagtgactatttgctc 9341150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 22856824 - 22856678
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||| |||||||||||||||| ||||||| |   |||||||||||||||||||||||| |||||| ||||| ||||||||||||| ||||||| | | |     
T  22856824 acataatcacttaacataattatttaacgtcggagactaaagtgataacggaagtgcagagttagagacttctttgtatttaatcctgagtcaagaatct 22856725  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
     ||| |||||| | |||| |||||| |||||||||||| ||||||||    
T  22856724 ttgtaacaacgtggtgcagagtcagtgactaaagtgaccatttgctc 22856678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 52440539 - 52440684
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | |||||||||| |||| ||||||||||||| ||||||||| ||| || ||||||||| ||||||||| ||| |||||||||     
T  52440539 acatcatcacttaacacatttttttaacgtcaag-actaaagtgataatggaagtgcagagtcagagacttatttatatttaatcctgactcagggacct 52440637  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||||||| |||  |||| |||||| ||| || |||| |||||||||    
T  52440638 atgtgacagcgatgtgcaaagtcagagaccaatgtgattatttgctc 52440684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 52439619 - 52439477
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | |||||||||| || |||||||||||||||||||| |||| ||     ||||||| ||||||||||| |||| ||| ||||     
T  52439619 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaaatgcagaga----gacttatctgtatttaatcctgagccagagacct 52439524  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||||||| |||| |||| | |||||| |||||||||||||||||||    
T  52439523 atgtgacagcgagctgcagaatcaggggctaaagtgactatttgctc 52439477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 8975301 - 8975161
Alignment:
Q  18 atcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccat 117  Q
    ||||||| |||||| |||| ||||||| ||| |||||||||||||||| ||||||| | | | |||||  ||| ||||||||| |||||||||||||  |    
T  8975301 atcatcaattaacaaaattatttaacgccaaagactaaagtgataacgaaagtgcatattcatggactactttatatttaatcttgagtcagggaccttt 8975202  T
Q  118 gtgacaacgagatgcacagtcagggactaaagtgactattt 158  Q
    |||||||| || |||| ||| |||||| |||||||| ||||    
T  8975201 gtgacaacaaggtgcaaagttagggaccaaagtgaccattt 8975161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 34088449 - 34088585
Alignment:
Q  17 catcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccca 116  Q
    |||||||||||||||||||| ||||| | |||||| ||||||||||  ||||||||| ||| || ||||| |||||||||||||||        ||||      
T  34088449 catcatcacttaacataattatttaatgtcaaggattaaagtgatagtggaagtgcagagtcagagacttctttgtatttaatcat--------gacctt 34088540  T
Q  117 tgtgacaacgagatgcacagtcagggactaaagtgactatttgct 161  Q
    ||||||| ||||||| | ||||||||||||||||||| |||||||    
T  34088541 tgtgacagcgagatgtagagtcagggactaaagtgacaatttgct 34088585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 22857558 - 22857619
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagt 77  Q
    ||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||    
T  22857558 acatcatcacttaacataattatttaacgtcatggactaaagtgataacggaagtgcaaagt 22857619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 6613957 - 6614051
Alignment:
Q  16 acatcatcacttaacataattttttaacggca-aggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcag 109  Q
    |||||||||||||||| |||| ||||||| |  ||||||||| ||||||| |||||||| ||| || ||||||||||||||||||| ||||||||    
T  6613957 acatcatcacttaacaaaattatttaacgtcggaggactaaaatgataactgaagtgcagagtcagagacttatttgtatttaatcctgagtcag 6614051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 50107185 - 50107275
Alignment:
Q  19 tcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcag 109  Q
    |||||| ||||||||||| ||||||| |||||||||||||||||||||||||||| | | || ||||  ||||||||||||| ||| ||||    
T  50107185 tcatcagttaacataattatttaacgccaaggactaaagtgataacggaagtgcacattcagagactattttgtatttaatcctgaatcag 50107275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 3117757 - 3117647
Alignment:
Q  52 ctaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgacaacgagatgcacagtcagggactaaagtg 151  Q
    |||||||||||||||||||| | ||| || || || ||||||||||||| |||||||| ||||  ||||| |||||  || | ||| |||||||||| ||    
T  3117757 ctaaagtgataacggaagtggagagtcagagatttctttgtatttaatcttgagtcagagacctttgtgataacgatgtgaagagttagggactaaaatg 3117658  T
Q  152 actatttgctc 162  Q
    |||||||||||    
T  3117657 actatttgctc 3117647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 11060766 - 11060905
Alignment:
Q  19 tcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatg 118  Q
    |||||| |||||| |||| ||||||| |  ||||||||||||||||| ||||||  | | |||||||  ||||||||||||  ||||||| |||||  ||    
T  11060766 tcatcagttaacagaattatttaacgtcggggactaaagtgataacgaaagtgcccattcagggactattttgtatttaattttgagtcatggacctttg 11060865  T
Q  119 tgacaacgagatgcacagtcagggactaaagtgactattt 158  Q
    ||||| |||| |||| ||||| |||  |||||||| ||||    
T  11060866 tgacagcgaggtgcatagtcaaggatcaaagtgaccattt 11060905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 32664647 - 32664585
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagtta 79  Q
    |||||||||||||||| | ||| |||||| |||||||||||||||||||||||||||| |||||    
T  32664647 acatcatcacttaaca-attttcttaacgtcaaggactaaagtgataacggaagtgcagagtta 32664585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 5783095 - 5783205
Alignment:
Q  23 cacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgac 122  Q
    ||||||||| |||| |||||||  |  |||||||||||||||||||||||| ||| | |||||| ||||||||||||  ||||||  ||| | |||||||    
T  5783095 cacttaacagaattatttaacgctagtgactaaagtgataacggaagtgcagagtcatggacttctttgtatttaattctgagtcgaggatctatgtgac 5783194  T
Q  123 aacgagatgca 133  Q
    | |||| ||||    
T  5783195 agcgaggtgca 5783205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 25037987 - 25037925
Alignment:
Q  51 actaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggac 113  Q
    ||||||||||||||| |||| || ||| || ||||| ||||||||||||||||||||||||||    
T  25037987 actaaagtgataacgtaagtccagagtcagtgacttctttgtatttaatcatgagtcagggac 25037925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 25043199 - 25043137
Alignment:
Q  51 actaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggac 113  Q
    ||||||||||||||| |||| || ||| || ||||| ||||||||||||||||||||||||||    
T  25043199 actaaagtgataacgtaagtccagagtcagtgacttctttgtatttaatcatgagtcagggac 25043137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 44020088 - 44019996
Alignment:
Q  58 tgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgacaacgagatgcacagtcagggactaaagt 150  Q
    |||||||| ||||||| ||| || ||||| ||| ||||||||| |||||||| |||   |||||||||||| |||| |||||||||| |||||    
T  44020088 tgataacgtaagtgcagagtcagagacttctttatatttaatcttgagtcagagacttttgtgacaacgagttgcaaagtcagggaccaaagt 44019996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 11830050 - 11829939
Alignment:
Q  19 tcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatg 118  Q
    |||||| ||||||||| ||||||||| ||| | ||||| | ||||||||| |||| |   | ||||| |||||||||||||| ||||| || ||||  ||    
T  11830050 tcatcagttaacataagtttttaacgtcaaagcctaaactaataacggaaatgcatatacaaggactaatttgtatttaatcttgagttagtgacctttg 11829951  T
Q  119 tgacaacgagat 130  Q
    ||||||||||||    
T  11829950 tgacaacgagat 11829939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 1407784 - 1407642
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    ||||||||| |||||| |||| ||||||| || ||||||||||||||||  ||||||| | | ||  |||  ||| |||||| |||| ||||| |||||     
T  1407784 acatcatcagttaacaaaattatttaacgtcagggactaaagtgataacataagtgcatattcagaaactactttatatttagtcataagtcatggacct 1407685  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactattt 158  Q
     ||||||||| || |||| |||||| ||  ||||||| |||||    
T  1407684 ttgtgacaacaaggtgcagagtcagagatgaaagtgattattt 1407642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 534518 - 534579
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagt 77  Q
    ||||||| |||||||| | ||||||||||| | |||||||||||||||| |||||| |||||    
T  534518 acatcataacttaacagatttttttaacggtagggactaaagtgataacagaagtgtaaagt 534579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 33342560 - 33342511
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacg 65  Q
    ||||||||||||||||||||| ||||||| ||  ||||||||||||||||    
T  33342560 acatcatcacttaacataattatttaacgtcagagactaaagtgataacg 33342511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 1001264 - 1001164
Alignment:
Q  50 gactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgacaacgagatgcacagtcagggactaaag 149  Q
    ||||||| ||||||| |||||||| | | || ||||  |||||||||||||  |||||| |||||  |||| ||||||| |||| ||||| |||||||||    
T  1001264 gactaaactgataacagaagtgcacattcagagactactttgtatttaatcccgagtcatggacctttgtggcaacgaggtgcaaagtcatggactaaag 1001165  T
Q  150 t 150  Q
    |    
T  1001164 t 1001164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 2923861 - 2923921
Alignment:
Q  102 tgagtcagggacccatgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||||||||||||  ||||| | |||| |||| ||| ||| ||||||||||||||||||||    
T  2923861 tgagtcagggacctttgtgatagcgaggtgcaaagttaggaactaaagtgactatttgctc 2923921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 12173238 - 12173290
Alignment:
Q  164 ttttagtttcctaaaccattgccctgaggatactggttaccaagatccataat 216  Q
    |||||||||||| ||||||| ||||||||  |||||||| ||||| |||||||    
T  12173238 ttttagtttccttaaccattaccctgagggcactggttaacaagacccataat 12173290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 9e-45; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 4593005 - 4592858
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | |||||||||| || ||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||      
T  4593005 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcttgagtcagggactt 4592906  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctcc 163  Q
    |||||||| |||| | || | |||||||||||||||||||||||||||    
T  4592905 atgtgacagcgagctacataatcagggactaaagtgactatttgctcc 4592858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 90 - 242
Target Start/End: Original strand, 13651173 - 13651324
Alignment:
Q  90 tgtatttaatcatgagtcagggacccatgtgacaacgagatgcacagtcagggactaaagtgactatttgctccttttagtttcctaaaccattgccctg 189  Q
    ||||||||||| ||||||||||||| |||||||| | || |||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| ||    
T  13651173 tgtatttaatcctgagtcagggacctatgtgacagc-aggtgcacagtcaaggactaaagtgactatttgctcattttagtttccttaaccattgccatg 13651271  T
Q  190 aggatactggttaccaagatccataatactagtattttttatctttttttgac 242  Q
    |||| | | || |  ||||||||||||||||||||||||||||||||||||||    
T  13651272 aggacattcgtcagtaagatccataatactagtattttttatctttttttgac 13651324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 2464813 - 2464667
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | |||||||||| ||  |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||     
T  2464813 acatcatcacttaacaaatttttttaacgtcagagactaaagtgataacgtaagtgcagagttagggacttatttgtatttaatcatgagtcatggacct 2464714  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    || ||||| |||| |||| | |||| |||||||||||||||||||||    
T  2464713 atatgacagcgagctgcagaatcagtgactaaagtgactatttgctc 2464667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 8074594 - 8074449
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||  | |||||||||| || | ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||      
T  8074594 acatcatcacttaaccga-ttttttaacgtcaggaactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggactt 8074496  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||||||| |||| |||| | ||||||||||||||||||||||||||    
T  8074495 atgtgacagcgagctgcataatcagggactaaagtgactatttgctc 8074449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 546017 - 546160
Alignment:
Q  18 atcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccat 117  Q
    |||||||||||||| | |||||||||| || ||||||||||||||||||||||||| ||| | |||||||| ||||||||||| ||||||||||||| ||    
T  546017 atcatcacttaacaaatttttttaacgtcagggactaaagtgataacggaagtgcagagtcaaggacttatctgtatttaatcctgagtcagggacctat 546116  T
Q  118 gtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||||| |||| |||| | || |||||||||||||||||||||||    
T  546117 gtgacagcgagctgcaaaatc-gggactaaagtgactatttgctc 546160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 9538028 - 9538174
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||| |||||||||||||||| ||||||  ||  ||||||| |||||||||||||||| | | || ||||| ||||||||||||| |||||||||||||     
T  9538028 acataatcacttaacataattatttaacatcagagactaaaatgataacggaagtgcacaatcagagacttctttgtatttaatcctgagtcagggacct 9538127  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    || ||||||||||||||| |||||||||| |||||||||||||||||    
T  9538128 atatgacaacgagatgcagagtcagggaccaaagtgactatttgctc 9538174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 21069433 - 21069287
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| |||||||||||||||   | |||||||| ||| |||||||| ||| | |||||||||||||||||||| |||||||| ||||     
T  21069433 acatcatcacttaacaaaattttttaacggcatatattaaagtgaaaacagaagtgcagagtcaaggacttatttgtatttaatcctgagtcagagacct 21069334  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
     |||||||||||| |||| |||||| |||||||||||||||||||||    
T  21069333 ctgtgacaacgaggtgcagagtcagagactaaagtgactatttgctc 21069287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 19183094 - 19182949
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||||| ||||||||  ||||||||||||||||||||||||||| | ||| ||| |||||||||||||||||| |||||||| ||||     
T  19183094 acatcatcacttaacatatttttttaatcgcaaggactaaagtgataacggaagtgtagagtcaggaacttatttgtatttaatcctgagtcagagacct 19182995  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgct 161  Q
    |||||||| |||| |||| ||||| |  ||||||| ||||||||||    
T  19182994 atgtgacagcgaggtgcaaagtcaagttctaaagtaactatttgct 19182949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 28591092 - 28591244
Alignment:
Q  16 acatcatcacttaacataattttt-taacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacc 114  Q
    |||||||||||||||| | ||||| ||||| |  ||||||||||||||| ||||||||| ||| ||||| |||||||||||||||| |||||||||||||    
T  28591092 acatcatcacttaacagattttttgtaacgtcggggactaaagtgataaaggaagtgcagagtcagggatttatttgtatttaatcctgagtcagggacc 28591191  T
Q  115 catgtgacaacgagatgcacagtcagggactaaagtgactatttgctcctttt 167  Q
     |||||||| |||| |||| |||||||||  ||||||||||||||||| ||||    
T  28591192 tatgtgacagcgaggtgcagagtcagggatcaaagtgactatttgctcttttt 28591244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 2466753 - 2466899
Alignment:
Q  17 catcatcacttaacataatttttt-aacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    ||||||||||||||| | |||||| |||| || ||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||| |||  ||||     
T  2466753 catcatcacttaacagattttttttaacgtcagggactaaagtgataacggaagtgcagagttagggacttatttttatttaatcctgaatcaatgacct 2466852  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||||| | |||| |||| |||||| ||| |||||||||||||||||    
T  2466853 atgtgatagcgaggtgcagagtcagagaccaaagtgactatttgctc 2466899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 14891126 - 14891268
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||||| |||||||||| ||  |||||||||||||||||||||| | ||| || |||||    | ||||||||||||||||| ||||     
T  14891126 acatcatcacttaacatatttttttaacgtcagagactaaagtgataacggaagtgtagagtcagagactt----gcatttaatcatgagtcagagacct 14891221  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||||||| |||| |||| ||| |||||| |||||||||||||||||    
T  14891222 atgtgacagcgaggtgcagagtgagggaccaaagtgactatttgctc 14891268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 32641705 - 32641817
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||||| |||||||||| || ||| ||||||||||||||||||||| ||| ||  |||||||||||||||||| ||||| |||||||     
T  32641705 acatcatcacttaacatatttttttaacgtcagggattaaagtgataacggaagtgcagagtcagcaacttatttgtatttaatcttgagtaagggacct 32641804  T
Q  116 atgtgacaacgag 128  Q
    | |||||||||||    
T  32641805 acgtgacaacgag 32641817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 40612640 - 40612784
Alignment:
Q  18 atcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccat 117  Q
    |||||||||||||| | |||||||||| || | | ||||||||||||||||||||| ||| ||| |  ||| ||||||||||| ||||||||||||| |     
T  40612640 atcatcacttaacagatttttttaacgtcaggaattaaagtgataacggaagtgcagagtcaggaaaatatctgtatttaatcctgagtcagggacctac 40612739  T
Q  118 gtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    ||||||  ||| |||| | ||||||||||||||||||||||||||    
T  40612740 gtgacagtgagctgcaaaatcagggactaaagtgactatttgctc 40612784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 25590574 - 25590429
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| |||||||||||| ||  || |||||||||||| |||||||| | | || |||||||||||||||||||  ||||||||||||     
T  25590574 acatcatcacttaacaaaattttttaacgtcagagattaaagtgataacagaagtgcagaatcagagacttatttgtatttaatc-cgagtcagggacct 25590476  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||||||| |||| |||| ||||||  |  |||||||||||||||||    
T  25590475 atgtgacagcgaggtgcagagtcagaaaacaaagtgactatttgctc 25590429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 19186199 - 19186344
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||| ||||||| | | |||||||| ||||||||||||||||||||||| || | ||| || ||||| ||||||||||||| | |||||||||||     
T  19186199 acatcatcgcttaacagattgttttaacgacaaggactaaagtgataacggaaatgtagagtcagagacttgtttgtatttaatcctaagtcagggacct 19186298  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgct 161  Q
    |||||||   |||||||| ||   | ||||||| ||||||||||||    
T  19186299 atgtgactgggagatgcagagcatgagactaaaatgactatttgct 19186344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 9537166 - 9537024
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    ||||||||||||| ||||||| ||||||| ||  |||||||||||||| ||||||||| ||| |  ||||| ||||||||||||  | |||||| ||||     
T  9537166 acatcatcacttaccataattatttaacgtcagtgactaaagtgataatggaagtgcacagtca-tgacttctttgtatttaattctaagtcagagacct 9537068  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttg 159  Q
    |||||||| |||| |||| ||| |||||||||||| || |||||    
T  9537067 atgtgacagcgaggtgcagagtgagggactaaagtcaccatttg 9537024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 16611865 - 16611726
Alignment:
Q  23 cacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgac 122  Q
    ||||||||| |||| ||||||| ||  |||||||||||||||||||||||| | | || | ||| ||||||||||||| |||||||| |||| |||||||    
T  16611865 cacttaacagaattatttaacgtcagagactaaagtgataacggaagtgcataatcagaggcttctttgtatttaatcctgagtcagagacctatgtgac 16611766  T
Q  123 aacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    | |||| || | ||||| | | ||||||||| ||||||||    
T  16611765 agcgaggtgtagagtcaagaattaaagtgaccatttgctc 16611726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 32640432 - 32640325
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | |||||||||| ||  ||||||||||||||| |||||  | |||||||||||||||||||||||||| ||||| | || ||     
T  32640432 acatcatcacttaacaaatttttttaacgtcagagactaaagtgataacagaagtttagagttagggacttatttgtatttaatcctgagttatggtcct 32640333  T
Q  116 atgtgaca 123  Q
    ||||||||    
T  32640332 atgtgaca 32640325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 8075812 - 8075958
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | ||||| |||| || ||||||||||||||||| ||||||| | | ||  |||| ||||||||||||| ||| ||||||| |     
T  8075812 acatcatcacttaacagattttttaaacgtcagggactaaagtgataacgaaagtgcagaatcagatacttttttgtatttaatcttgaatcagggatct 8075911  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    || | ||| |||| |||| |||||  ||| |||| ||||||||||||    
T  8075912 atctaacagcgaggtgcagagtcaatgaccaaagcgactatttgctc 8075958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 544792 - 544685
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||| ||||||||||||| |||||||| | ||   |||||| | |||||||||||||| ||| || ||||||||||||||||||| |||||||| ||||     
T  544792 acataatcacttaacatatttttttaatgtcagaaactaaatttataacggaagtgcagagtcagtgacttatttgtatttaatcctgagtcagagacct 544693  T
Q  116 atgtgaca 123  Q
    || |||||    
T  544692 atctgaca 544685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 31947016 - 31947158
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||||| ||||||||| |||  |||||||||||||||||||||  | ||| |  ||||| ||||||||||||  | ||| ||| | |     
T  31947016 acatcatcacttaacatatttttttaacagcagtgactaaagtgataacggaagtctagagtcatagacttgtttgtatttaattttaagtaaggaatct 31947115  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactattt 158  Q
    || ||||||| |  |||| | |||| |||||||||||||||||    
T  31947116 atatgacaacaaagtgcagaatcagagactaaagtgactattt 31947158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 19271476 - 19271375
Alignment:
Q  26 ttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgacaac 125  Q
    ||||||||| ||||||||| || |||||||| |||||||||||||||| | | | |||||  ||| |||||||||||||| | ||||| | |||||||||    
T  19271476 ttaacataaatttttaacgtcatggactaaactgataacggaagtgcacattaaaggactactttatatttaatcatgagcctgggacacttgtgacaac 19271377  T
Q  126 ga 127  Q
    ||    
T  19271376 ga 19271375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 16979136 - 16978996
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| |||   ||||||  |  ||||||| |||||||| |||| || ||||||||||||||||| |||||||  |||||||  ||||     
T  16979136 acatcatcacttaacagaataacttaacgttagagactaaaatgataacgtaagtacagagttagggacttatttgcatttaattctgagtcaatgacct 16979037  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactat 156  Q
     |||| || | || |||| ||||| ||||||||||||||||    
T  16979036 ttgtggcagcaaggtgcaaagtcaaggactaaagtgactat 16978996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 158
Target Start/End: Complemental strand, 18400284 - 18400192
Alignment:
Q  66 gaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgacaacgagatgcacagtcagggactaaagtgactattt 158  Q
    |||||||| ||| || ||||| ||| ||||||||| ||||||| ||||| ||||||||  ||| |||| ||||||||||||||||||| ||||    
T  18400284 gaagtgcagagtcagtgacttctttttatttaatcctgagtcaaggacctatgtgacagtgaggtgcagagtcagggactaaagtgaccattt 18400192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 28589843 - 28589739
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | |||||||||| ||  ||||||| || |||||||||| |||||| |   |  |||||||||||||| ||||||||||||||     
T  28589843 acatcatcacttaacagatttttttaacgtcagagactaaaatggtaacggaagtacaaagtcaaaaatgtatttgtatttaattatgagtcagggacct 28589744  T
Q  116 atgtg 120  Q
    |||||    
T  28589743 atgtg 28589739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 13483126 - 13483029
Alignment:
Q  54 aaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgacaacgagatgcacagtcagggactaaagtga 152  Q
    |||||||||||| ||||||| ||| || ||||| ||| ||||||||||||||||||| ||| || |||   |||||| || |||| |||||||||||||    
T  13483126 aaagtgataacgaaagtgcagagtaagagacttctttatatttaatcatgagtcaggaacctatctgaatgcgagatacagagtc-gggactaaagtga 13483029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 14881056 - 14881010
Alignment:
Q  51 actaaagtgataacggaagtgcaaagttagggacttatttgtattta 97  Q
    ||||||||||||||||||||||| ||| |||||||||||||| ||||    
T  14881056 actaaagtgataacggaagtgcagagtcagggacttatttgtgttta 14881010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 4594080 - 4594174
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcaggga 112  Q
    |||||||||||||||| |  |||||||||  | ||| ||| ||||||| ||||||||| ||| | | |||||||||||||||||| |||||||||||    
T  4594080 acatcatcacttaacagatctttttaacgtaagggattaa-gtgataatggaagtgcagagtcatg-acttatttgtatttaatcctgagtcaggga 4594174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 13483174 - 13483218
Alignment:
Q  55 aagtgataacggaagtgcaaagttagggacttatttgtatttaat 99  Q
    ||||||||||||||||||||||| || ||||| ||||||||||||    
T  13483174 aagtgataacggaagtgcaaagtcagagacttgtttgtatttaat 13483218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 35538281 - 35538373
Alignment:
Q  17 catcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcag 109  Q
    |||||||| |||||| |||| ||||||   ||||| ||||||||||||||||||||| | | | | |||  |||||||||||||| |||||||    
T  35538281 catcatcagttaacagaattatttaacattaaggattaaagtgataacggaagtgcacattgaagaactactttgtatttaatcacgagtcag 35538373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 18004777 - 18004698
Alignment:
Q  21 atcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatc 100  Q
    |||||||||||||| | ||||||  ||  |||||||||||||||||||||||| ||| |  ||| | |||||||||||||    
T  18004777 atcacttaacataactatttaacatcagagactaaagtgataacggaagtgcagagtcatagacctctttgtatttaatc 18004698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 26327054 - 26327193
Alignment:
Q  19 tcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatg 118  Q
    |||||| |||||| || ||||||||| ||||||||||| |||| ||||||||||| |   | ||  |  ||| ||||||||| |||||||||  ||| |     
T  26327054 tcatcagttaacagaaatttttaacgtcaaggactaaactgattacggaagtgcacatccaagggttattttatatttaatcctgagtcaggagccctta 26327153  T
Q  119 tgacaacgagatgcacagtcagggactaaagtgactattt 158  Q
    |||||||||| |||| |||||| ||| ||| | |||||||    
T  26327154 tgacaacgaggtgcagagtcagtgaccaaaataactattt 26327193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 24900411 - 24900457
Alignment:
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||||||| |||| |||| |||||||||| |||||||||||||||||    
T  24900411 atgtgacagcgaggtgcagagtcagggaccaaagtgactatttgctc 24900457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 40611404 - 40611350
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagt 70  Q
    |||||||||| ||||||| |||||||||| ||  |||||||||||||| ||||||    
T  40611404 acatcatcacctaacatatttttttaacgtcagagactaaagtgataagggaagt 40611350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 43)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 44333281 - 44333138
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | |||||||||| |||||||||  ||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||     
T  44333281 acatcatcacttaacagatttttttaacgtcaaggacta--gtgataacggaagtgcagagtcagagacttatttgtatttaatcatgagtcagggacct 44333184  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgct 161  Q
    |||||||| |||| |||| |||||||||| ||||||||||||||||    
T  44333183 atgtgacagcgaggtgcagagtcagggaccaaagtgactatttgct 44333138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 48646193 - 48646044
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||| ||| |||||||||| ||  |||||||||||||||||||||| | ||| |||||||||||||||||||||| |||||||||||||     
T  48646193 acatcatcacttaatatatttttttaacgacagagactaaagtgataacggaagtgtagagtcagggacttatttgtatttaatcctgagtcagggacct 48646094  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctcctt 165  Q
    |||||||| |||| |||| |||||||||| ||||||||||||| ||||||    
T  48646093 atgtgacagcgaggtgcatagtcagggaccaaagtgactatttactcctt 48646044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 48777401 - 48777254
Alignment:
Q  16 acatcatcacttaacataattttttaa-cggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacc 114  Q
    |||||||||||||||||| |||||||| || || ||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||     
T  48777401 acatcatcacttaacatatttttttaaacgtcatggactaaagtgataacggaagtgcagagtcagggaattatttgtatttaatcatgagtcagggact 48777302  T
Q  115 catgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
     |||||||| |||| |||| | |||| |||||||||||||||||||||    
T  48777301 tatgtgacagcgagctgcagaatcagagactaaagtgactatttgctc 48777254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 7258419 - 7258273
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | |||||||||| || |||||||||||||||| |||||||| ||| || ||||||||||||||||||| ||||| |||||||     
T  7258419 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacagaagtgcagagtcagagacttatttgtatttaatcctgagttagggacct 7258320  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    ||||||||||||| || | |||||||||| |||||||||||||||||    
T  7258319 atgtgacaacgaggtgtagagtcagggaccaaagtgactatttgctc 7258273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 44334429 - 44334574
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||||| |||||||| | || ||||||||||||||| ||||||||| ||| |||||||||||| |||||||||||||||||||||||     
T  44334429 acatcatcacttaacata-ttttttaatgtcagggactaaagtgataatggaagtgcagagtcagggacttatttatatttaatcatgagtcagggacct 44334527  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||| ||| |||| |||| | ||||| ||||||||||||||||||||    
T  44334528 atgtaacagcgagctgcagaatcaggaactaaagtgactatttgctc 44334574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 7259663 - 7259805
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | |||||||||| || ||||||||||||||||||||||| | ||| |||||||||||||||||||||| ||| |||| |||||    
T  7259663 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgtagagtcagggacttatttgtatttaatcctgaatcagagaccc 7259762  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactattt 158  Q
    |||||||| |||| | || | |||| || ||||||||||||||    
T  7259763 atgtgacagcgagctacaaaatcagcgattaaagtgactattt 7259805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 43457601 - 43457459
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| |||   |||||| || | ||||||||||||||||||||||| |||  ||||||||||||||||||||| |||||||||||||     
T  43457601 acatcatcacttaacagaataacttaacgtcatgaactaaagtgataacggaagtgcagagtcggggacttatttgtatttaatcctgagtcagggacct 43457502  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactattt 158  Q
    ||| |||| |||| |||| | ||||||||||||||||||||||    
T  43457501 atgcgacagcgagctgcagaatcagggactaaagtgactattt 43457459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 48788651 - 48788797
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||| ||||| | |||||||||| ||  |||||||||||||||||||||||| ||| || ||||||||| |||||||| ||||||||||||||     
T  48788651 acatcatcacctaacaaatttttttaacgtcagagactaaagtgataacggaagtgcagagtcagagacttatttatatttaattatgagtcagggacct 48788750  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||||||| |||| |||| ||||| |||  |||||||||||||||||    
T  48788751 atgtgacagcgaggtgcaaagtcaaggatcaaagtgactatttgctc 48788797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 46286645 - 46286504
Alignment:
Q  18 atcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccat 117  Q
    |||||||||||||||| ||||||||||| |  || |||||||||||| |||||||| ||| || ||||||||||||||||||| |||||||||||||  |    
T  46286645 atcatcacttaacatatttttttaacggtagagattaaagtgataacagaagtgcagagtcagagacttatttgtatttaatcctgagtcagggaccttt 46286546  T
Q  118 gtgacaacgagatgcacagtcagggactaaagtgactatttg 159  Q
     | ||| ||||||| | |||||||||||||||||||||||||    
T  46286545 ctaacagcgagatgaagagtcagggactaaagtgactatttg 46286504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 48647424 - 48647568
Alignment:
Q  18 atcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccat 117  Q
    |||||||||||||| | |||||||||| || ||||||||||||||||  ||||||| ||| || ||||||||||||||||||| ||||||||||||| ||    
T  48647424 atcatcacttaacagatttttttaacgtcagggactaaagtgataacaaaagtgcagagtgagagacttatttgtatttaatcctgagtcagggacctat 48647523  T
Q  118 gtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||| | |||| || | | |||||| |||||||||||||||||||    
T  48647524 gtgatagcgagctgtagaatcagggtctaaagtgactatttgctc 48647568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 10899052 - 10899203
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | |||||||||| || ||||||||||||||||||||||||| ||| || ||||||||||||||||||| || |||| ||| |     
T  10899052 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgggtcaaggatct 10899151  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctcctttt 167  Q
    |||||||| |||| |||| |||||||||| ||||| || |||| ||| ||||    
T  10899152 atgtgacagcgaggtgcagagtcagggaccaaagtaacaatttactcatttt 10899203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 35727842 - 35727697
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| |  ||||||||| || ||||||||||||||||||| ||||| ||| || ||||||||| ||||||||| |||||||||||||     
T  35727842 acatcatcacttaacagagatttttaacgtca-ggactaaagtgataacggatgtgcagagtcagagacttatttatatttaatcctgagtcagggacct 35727744  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||||||| |||| |||| |||||||||  ||||||||| |||||||    
T  35727743 atgtgacagcgaggtgcagagtcagggatcaaagtgactgtttgctc 35727697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 42477524 - 42477379
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||||| |||||||||| || ||| |||| |||||||||||||||| ||| ||| |||||||||||||||||| |||||||| ||||     
T  42477524 acatcatcacttaacatatttttttaacgtcagggattaaaatgataacggaagtgcagagtcagg-acttatttgtatttaatcctgagtcagagacct 42477426  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    ||| ||||||||| |||| ||||| |||| ||| ||| |||||||||    
T  42477425 atgcgacaacgaggtgcagagtcaaggaccaaattgattatttgctc 42477379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 30924988 - 30925130
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | |||||||||| ||  ||||||||| |||||||||||||| ||| || ||||||||||||||||||| ||||||| |||||     
T  30924988 acatcatcacttaacaga-ttttttaacgtcagagactaaagtaataacggaagtgcatagtcagagacttatttgtatttaatcctgagtcaaggacct 30925086  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttg 159  Q
    |||||||   ||| |||| | ||||||| |||||||||||||||    
T  30925087 atgtgactgggagctgcagaatcagggattaaagtgactatttg 30925130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 35729065 - 35729211
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | || ||||| | || |||||| ||||||| |||||||||| ||| || ||||||||||||| ||||| | ||||| |||||     
T  35729065 acatcatcacttaacagatttatttaatgtcagggactacagtgatagcggaagtgcagagtcagtgacttatttgtatgtaatcctaagtcaaggacct 35729164  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||||||| |||| |||| | ||||||| ||||||||||||||||||    
T  35729165 atgtgacagcgagctgcaaaatcagggaataaagtgactatttgctc 35729211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 34888905 - 34889016
Alignment:
Q  19 tcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatg 118  Q
    |||||||||||||||||| || |||| |||||||||||||||||||||||||||| ||||| |||| | ||| ||||||||||||||| || ||||  ||    
T  34888905 tcatcacttaacataattattaaacgtcaaggactaaagtgataacggaagtgcagagttaaggacatctttatatttaatcatgagtgagagacctttg 34889004  T
Q  119 tgacaacgagat 130  Q
    ||||| ||||||    
T  34889005 tgacagcgagat 34889016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 157
Target Start/End: Original strand, 8375569 - 8375703
Alignment:
Q  23 cacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgac 122  Q
    ||||||||| |||| ||||||| |  |||||||| |||||||||||||||| ||| ||  |||| ||||||||||||||||||||||||||| |||||||    
T  8375569 cacttaacaaaattatttaacgtcgcggactaaattgataacggaagtgcagagtcagaaacttctttgtatttaatcatgagtcagggacctatgtgac 8375668  T
Q  123 aacgagatgcacagtcagggactaaagtgactatt 157  Q
    |  | | |||  ||||||||||||| |||||||||    
T  8375669 agtgcggtgcgaagtcagggactaatgtgactatt 8375703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 12223678 - 12223820
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| |||| ||||||  ||  ||||||||| ||||||||| |||| ||| |||||||| ||| ||||||||| |||||||||||||     
T  12223678 acatcatcacttaacagaattatttaacatcagtgactaaagtaataacggaactgcagagtcagggacttctttatatttaatcctgagtcagggacct 12223777  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactattt 158  Q
    ||||||||  ||  ||||  |||||||||||||||||| ||||    
T  12223778 atgtgacattgatgtgcagtgtcagggactaaagtgaccattt 12223820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 39708247 - 39708101
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||| ||||| |||||||||| ||||||  || |||||||||||||||||||||||||||||  | ||||| |||||||| |||| ||||||| |||||     
T  39708247 acattatcacataacataattatttaacatcacggactaaagtgataacggaagtgcaaagtcggtgacttctttgtattcaatcttgagtcatggacct 39708148  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
     ||||||  |||| | || |||||| ||||||||||||||| |||||    
T  39708147 ttgtgacggcgaggtacagagtcagagactaaagtgactatatgctc 39708101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 13578300 - 13578392
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcag 109  Q
    ||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||| ||| || ||||||||||||||||||  ||||||||    
T  13578300 acatcatcacttaacataattatttaacgtca-ggactaaagtgataacggaagtgcagagtcagtgacttatttgtatttaattctgagtcag 13578392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 8048763 - 8048909
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||| | |||| |||||||  || || ||||||||||||||||||||| |||  | ||||| ||||||||||||| |||||||| ||||     
T  8048763 acatcatcacttaatagaattatttaacgttaaagattaaagtgataacggaagtgcagagtcggagacttctttgtatttaatcttgagtcagagacct 8048862  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
     |||| || |||| |||| |||||| |  ||||||||||||||||||    
T  8048863 ttgtgtcagcgaggtgcagagtcagagggtaaagtgactatttgctc 8048909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 148
Target Start/End: Complemental strand, 8375036 - 8374926
Alignment:
Q  38 tttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgacaacgagatgcacagt 137  Q
    ||||||| ||| |||||||||||||||||||||||||| | ||  |||| ||||||||||||  |||||||| |||| |||||||| |||| |||| |||    
T  8375036 tttaacgtcaaagactaaagtgataacggaagtgcaaaatcagaaacttttttgtatttaattctgagtcagagacctatgtgacagcgaggtgcagagt 8374937  T
Q  138 cagggactaaa 148  Q
    |||||||||||    
T  8374936 cagggactaaa 8374926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 45583792 - 45583682
Alignment:
Q  52 ctaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgacaacgagatgcacagtcagggactaaagtg 151  Q
    |||||||||||||||||||||| | | ||| |||||| ||||||||||  ||||||||||||| |||||| | |||  |||| | |||||||||||||||    
T  45583792 ctaaagtgataacggaagtgcagaatcaggaacttatctgtatttaattctgagtcagggacctatgtgatagcgaactgcagaatcagggactaaagtg 45583693  T
Q  152 actatttgctc 162  Q
    |||||||||||    
T  45583692 actatttgctc 45583682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 45584475 - 45584566
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtc 107  Q
    |||||||||||||||| | |||||||||| || ||||||||||||||||||||||||| ||| |  | ||||||||||||||||| ||||||    
T  45584475 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcattggcttatttgtatttaatcctgagtc 45584566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 19433913 - 19434058
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| |||| ||||||| ||  ||||||||||||||| |||||||  |||  | |||||  || ||||||||| | | |||| ||||     
T  19433913 acatcatcacttaacagaattatttaacgccatagactaaagtgataactgaagtgcggagtcggtgacttccttatatttaatcctaaatcagagacct 19434012  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgct 161  Q
     ||||||||||||||| | ||| ||||||||||||||| |||||||    
T  19434013 ttgtgacaacgagatggagagttagggactaaagtgacaatttgct 19434058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 12220166 - 12220011
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| |||| ||||||| |||| |||||||||||| | |||||||| ||| || ||||| ||| ||||||||| ||||||||| | |     
T  12220166 acatcatcacttaacaaaattatttaacgtcaag-actaaagtgatatcagaagtgcagagtcagagacttctttctatttaatcttgagtcaggaatct 12220068  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctccttttagttt 172  Q
     |||||||||||| |||| ||  ||  ||||||||||  |||||||| |||| ||||    
T  12220067 ttgtgacaacgaggtgcatagctagacactaaagtgatcatttgctcatttttgttt 12220011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 44529172 - 44529076
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcaggga 112  Q
    |||||||| ||||||| |||| ||||||| || |||||||||||||||| ||||||   |||  | |||||||||||||||||||||||||||||||    
T  44529172 acatcatcgcttaacaaaattatttaacgtcagggactaaagtgataacagaagtgttgagtcggagacttatttgtatttaatcatgagtcaggga 44529076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 5930112 - 5930257
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| |||| ||||| |||| ||||||||||||||||||||||||| || | |  | ||  |||||||||||| ||||| |||||||     
T  5930112 acatcatcacttaacagaattatttaatggcagggactaaagtgataacggaagtgcacag-tcgaaaatttcttgtatttaatcctgagttagggacct 5930210  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
     ||||| | |||  |||| ||| || |||||||||||| ||||||||    
T  5930211 ttgtgatagcgaagtgcaaagtaagagactaaagtgaccatttgctc 5930257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 44530595 - 44530687
Alignment:
Q  21 atcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggac 113  Q
    ||||||||||| |||   |||||| ||| |||||||||||||||||||||||| ||| || ||||||||| ||||||||| |||||| |||||    
T  44530595 atcacttaacagaataacttaacgccaatgactaaagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcggggac 44530687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 32793315 - 32793231
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatc 100  Q
    ||||||||| ||||||||||| ||||||| ||| ||||||||||||||| ||| |||| | | |  |||||||||||||||||||    
T  32793315 acatcatcagttaacataattatttaacgccaaagactaaagtgataaccgaaatgcagaatcaatgacttatttgtatttaatc 32793231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 158
Target Start/End: Original strand, 385662 - 385732
Alignment:
Q  88 tttgtatttaatcatgagtcagggacccatgtgacaacgagatgcacagtcagggactaaagtgactattt 158  Q
    |||||||| |||||||||| |||||||  ||||||||||||||||| ||||| |||| |||||||| ||||    
T  385662 tttgtattcaatcatgagttagggacctctgtgacaacgagatgcagagtcaaggaccaaagtgaccattt 385732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 158
Target Start/End: Complemental strand, 34705009 - 34704911
Alignment:
Q  60 ataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgacaacgagatgcacagtcagggactaaagtgactattt 158  Q
    |||||| |||| || ||| || ||||| ||||||||||||| |||||||| | ||  |||||||||||| |||| |||| | |||||||||||||||||    
T  34705009 ataacgaaagtacacagtcagagacttctttgtatttaatcctgagtcagaggcctttgtgacaacgaggtgcagagtcggagactaaagtgactattt 34704911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 2677768 - 2677877
Alignment:
Q  19 tcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatg 118  Q
    |||||| |||||  || |||||||||  | |||||||| |||||||| ||||||| | ||||||| |  |||||||||||||||||||||  ||||  ||    
T  2677768 tcatcagttaactaaagtttttaacgcgagggactaaactgataacgaaagtgcacatttagggaatactttgtatttaatcatgagtcatagacctttg 2677867  T
Q  119 tgacaacgag 128  Q
    ||||||||||    
T  2677868 tgacaacgag 2677877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 10894449 - 10894391
Alignment:
Q  61 taacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgt 119  Q
    ||||||||||||| | |||| ||||||||| ||||||||| ||||||||||||| ||||    
T  10894449 taacggaagtgcagaattagagacttatttatatttaatcttgagtcagggacctatgt 10894391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 158
Target Start/End: Complemental strand, 21062896 - 21062819
Alignment:
Q  81 ggacttatttgtatttaatcatgagtcagggacccatgtgacaacgagatgcacagtcagggactaaagtgactattt 158  Q
    |||||| | ||||||||||| ||||||| |||||  | ||||| |||| |||| ||||||||||||||||||| ||||    
T  21062896 ggacttctatgtatttaatcctgagtcaaggacctttatgacagcgaggtgcaaagtcagggactaaagtgaccattt 21062819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 46287385 - 46287446
Alignment:
Q  18 atcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagtta 79  Q
    ||||||| |||||| | |||||||||| ||| ||||||||||||||||||| |||| |||||    
T  46287385 atcatcatttaacaaatttttttaacgccaaagactaaagtgataacggaaatgcagagtta 46287446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 7509450 - 7509562
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||| ||||||||||| |||| ||||||| || ||  |||||| |||||||||||||| | |  | ||||| ||| ||||||||||||| |||  ||||     
T  7509450 acataatcacttaacaaaattatttaacgtcaggggttaaagtaataacggaagtgcagaatctgagacttctttatatttaatcatgaatcaaagacct 7509549  T
Q  116 atgtgacaacgag 128  Q
     ||||||||||||    
T  7509550 ttgtgacaacgag 7509562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 8879532 - 8879616
Alignment:
Q  26 ttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagg 110  Q
    |||||| |||| ||||||| || |||||||||||||||| ||| |||| | | ||| |||  ||||||||||||| |||||||||    
T  8879532 ttaacaaaattatttaacgtcagggactaaagtgataacagaaatgcacattcaggaactactttgtatttaatcctgagtcagg 8879616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 24287619 - 24287567
Alignment:
Q  21 atcacttaacataattttttaacggcaaggactaaagtgataacggaagtgca 73  Q
    |||| ||||||||||| ||||||| |||||||||||||||||||  |||||||    
T  24287619 atcaattaacataattatttaacgtcaaggactaaagtgataacttaagtgca 24287567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 33060954 - 33060899
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtg 71  Q
    ||||||||| |||||| |||| ||||||| ||  ||||||||||||||||||||||    
T  33060954 acatcatcatttaacagaattatttaacgtcagagactaaagtgataacggaagtg 33060899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 202
Target Start/End: Complemental strand, 33474334 - 33474296
Alignment:
Q  164 ttttagtttcctaaaccattgccctgaggatactggtta 202  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  33474334 ttttagtttccttaaccattgccctgatgatactggtta 33474296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 33607618 - 33607700
Alignment:
Q  32 taattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacc 114  Q
    ||||| ||||||| || || ||||| |||||||||||||||| | | || ||||| ||||||||||||| ||| |||| ||||    
T  33607618 taattatttaacgtcagggtctaaaatgataacggaagtgcagaatcagagacttctttgtatttaatcctgaatcagagacc 33607700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 30917857 - 30917800
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgca 73  Q
    ||||||||| ||| ||||||| ||||||| | |||| ||||||||||| |||||||||    
T  30917857 acatcatcagttagcataattatttaacgtcgaggattaaagtgataatggaagtgca 30917800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 48573129 - 48572984
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||| ||||||| | |||||||||| |||||||||||||||||||||||||||| ||| || | ||||||||||||||||| |||||||||||||     
T  48573129 acatcatcgcttaacaaatttttttaacgtcaaggactaaagtgataacggaagtgcagagtcagaggcttatttgtatttaatcctgagtcagggacct 48573030  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgct 161  Q
    |||||| |||||| |||| |||||||||| ||||||||||||||||    
T  48573029 atgtgataacgaggtgcagagtcagggaccaaagtgactatttgct 48572984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 16 - 168
Target Start/End: Complemental strand, 36279096 - 36278944
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||| | |||||||||||| || |||||||| |||||||||||||||| ||| || ||||||||||||||||||| ||| |||||||||     
T  36279096 acatcatcacttaaaagaattttttaacgtcagggactaaaatgataacggaagtgcagagtcagagacttatttgtatttaatcctgaatcagggacct 36278997  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctcctttta 168  Q
    ||||||||||||| || | | ||||||||||||||||||||||||||| ||||    
T  36278996 atgtgacaacgagctgtataatcagggactaaagtgactatttgctccattta 36278944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 35 - 162
Target Start/End: Complemental strand, 17700643 - 17700516
Alignment:
Q  35 ttttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgacaacgagatgcac 134  Q
    |||||||||| || ||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| ||| ||||||||||||| ||||     
T  17700643 ttttttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcaggaacctatgtgacaacgaggtgcag 17700544  T
Q  135 agtcagggactaaagtgactatttgctc 162  Q
    |||||  |||||||||||||||||||||    
T  17700543 agtcaaagactaaagtgactatttgctc 17700516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 167
Target Start/End: Complemental strand, 55388217 - 55388066
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | |||||||||| || |||||||||||||||||| |||||| ||| ||  |||||||||||||||||| |||||||| ||||     
T  55388217 acatcatcacttaacaaatttttttaacgtcagggactaaagtgataacgggagtgcagagtcagtaacttatttgtatttaatcctgagtcagagacct 55388118  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctcctttt 167  Q
    || ||||| |||| |||| | |||||||||||||||||||||||||| ||||    
T  55388117 atatgacagcgagctgcagaatcagggactaaagtgactatttgctcatttt 55388066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 35 - 158
Target Start/End: Original strand, 17701917 - 17702040
Alignment:
Q  35 ttttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgacaacgagatgcac 134  Q
    |||||||||| || ||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||| || ||||| |||| ||||     
T  17701917 ttttttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcttgagtcagggacctatatgacagcgagctgcag 17702016  T
Q  135 agtcagggactaaagtgactattt 158  Q
    | |||| |||||||||||||||||    
T  17702017 aatcagagactaaagtgactattt 17702040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 52317123 - 52316977
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | |||||||||| || |||||||| |||||||||| ||||| |||||  |||||||||||||||||||||||||||| ||||     
T  52317123 acatcatcacttaacagatttttttaacgtcatggactaaaatgataacggaggtgcagagttaaagacttatttgtatttaatcatgagtcagagacct 52317024  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    || ||||| |||| |||| | |||| ||||||||||| |||||||||    
T  52317023 atatgacagcgagctgcagaatcagagactaaagtgattatttgctc 52316977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 52318297 - 52318442
Alignment:
Q  17 catcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccca 116  Q
    ||||||||||||||| | |||||||||| || |||||||||| ||| | |||||||| ||| |||||||||||||||||||||| ||||||||||| | |    
T  52318297 catcatcacttaacagatttttttaacgtcagggactaaagtaatatcagaagtgcagagtcagggacttatttgtatttaatcctgagtcagggatcta 52318396  T
Q  117 tgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    ||||||| |||  |||| |||||| ||| |||||||||||||||||    
T  52318397 tgtgacagcgaagtgcagagtcagagaccaaagtgactatttgctc 52318442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 50 - 162
Target Start/End: Complemental strand, 19114643 - 19114531
Alignment:
Q  50 gactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgacaacgagatgcacagtcagggactaaag 149  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||  |||||||||||  |||| |||||||||||||||    
T  19114643 gactaaagtgataacggaagtgcaaagttagtgacttctttgtatttaatcttgagtcagggacctctgtgacaacgaagtgcagagtcagggactaaag 19114544  T
Q  150 tgactatttgctc 162  Q
    |||  ||||||||    
T  19114543 tgatcatttgctc 19114531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 20464213 - 20464069
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | || ||||||| |  |||||||||||||||| |||||||| ||| |||||||| |||||||||||||||||| ||||||||     
T  20464213 acatcatcacttaacagagttatttaacgtcgtggactaaagtgataacagaagtgcagagtcagggacttctttgtatttaatcatgagccagggacct 20464114  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgc 160  Q
     |||||||||||| |||| |||| |||||||||||| | ||||||    
T  20464113 ttgtgacaacgaggtgcagagtcggggactaaagtgtccatttgc 20464069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 33428421 - 33428560
Alignment:
Q  23 cacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgac 122  Q
    |||||||||||||| |||||||   ||||||||||||| ||||||| |||| ||| | |||||| ||||||||||||  ||||||||||||| |||||||    
T  33428421 cacttaacataattatttaacgctgaggactaaagtgacaacggaaatgcagagtcaaggacttctttgtatttaattctgagtcagggacctatgtgac 33428520  T
Q  123 aacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||||| |||| |||||||||| |||||||| ||||||||    
T  33428521 aacgaggtgcagagtcagggacgaaagtgaccatttgctc 33428560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 47118037 - 47118176
Alignment:
Q  23 cacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgac 122  Q
    ||||||||| |||| ||||||| || ||||||||||||||||| ||||||| ||| || ||||| |||| |||||||| |||||| |||||  || ||||    
T  47118037 cacttaacaaaattatttaacgtcagggactaaagtgataacgaaagtgcagagtcagagacttctttgcatttaatcctgagtcggggacttatatgac 47118136  T
Q  123 aacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||||| |||| ||||||||||||||||||| ||||||||    
T  47118137 aacgaggtgcagagtcagggactaaagtgaccatttgctc 47118176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 45600925 - 45601066
Alignment:
Q  23 cacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgac 122  Q
    ||||||||| |||| ||||||| |  ||||||||||||||||||||||||| ||| ||| |||| ||||||||||||| ||| ||||||||| |||||||    
T  45600925 cacttaacagaattatttaacgtcgtggactaaagtgataacggaagtgcagagtcagg-acttctttgtatttaatcctgaatcagggacctatgtgac 45601023  T
Q  123 aacgagatgcacagtcagggactaaagtgactatttgctcctt 165  Q
    | ||||   || ||||||||||||||||||| |||||||||||    
T  45601024 agcgagggacagagtcagggactaaagtgacgatttgctcctt 45601066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 49 - 162
Target Start/End: Original strand, 2592019 - 2592132
Alignment:
Q  49 ggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgacaacgagatgcacagtcagggactaaa 148  Q
    ||||||||||||||||||||||    ||| |||||||||||||||||||||| ||||||||||||| |||||||| |||| |||| | | ||||||||||    
T  2592019 ggactaaagtgataacggaagtattgagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacagcgagctgcagaattagggactaaa 2592118  T
Q  149 gtgactatttgctc 162  Q
    ||||||||||||||    
T  2592119 gtgactatttgctc 2592132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 36280296 - 36280401
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||||| |||||||||| || ||||||||||||||||||||||||| ||| || ||||||||| ||||||||| |||||||| ||||     
T  36280296 acatcatcacttaacatatttttttaacgtcagggactaaagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcagagacct 36280395  T
Q  116 atgtga 121  Q
    ||||||    
T  36280396 atgtga 36280401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 2591769 - 2591625
Alignment:
Q  18 atcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccat 117  Q
    |||||||||||||| |||   |||||  || ||||||||||||| | ||||||||| ||| || ||||| ||||||||||||| ||||||||||||| ||    
T  2591769 atcatcacttaacagaataacttaacatcagggactaaagtgatcatggaagtgcagagtcagagacttgtttgtatttaatcctgagtcagggacctat 2591670  T
Q  118 gtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||||| | || |||| | ||||||||||||||||||||||||||    
T  2591669 gtgacagcaagctgcagaatcagggactaaagtgactatttgctc 2591625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 53959079 - 53959186
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | |||||||||| ||  |||||||||||||||||||||||| ||| | | ||||||||||||||||||||||||||| ||||     
T  53959079 acatcatcacttaacaaatttttttaacgtcagagactaaagtgataacggaagtgcagagtcatgaacttatttgtatttaatcatgagtcagagacct 53959178  T
Q  116 atgtgaca 123  Q
    ||||||||    
T  53959179 atgtgaca 53959186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 3671182 - 3671037
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| | ||| |  ||||||||||||||||||  |||||||| ||||     
T  3671182 acatcatcacttaacataattttttaacggcagggattaaagtgataacggaagtggagagtcatagacttatttgtatttaattctgagtcagagacct 3671083  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
     ||||| |  ||| |||| ||||| ||| |||||||||||| |||||    
T  3671082 ttgtgatagagaggtgcaaagtcaagga-taaagtgactatatgctc 3671037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 34263949 - 34263803
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||| ||||||||| |||||||| | || ||| ||||||||||| ||||||| | ||| || ||||||||||||||||||| ||| ||| |||||     
T  34263949 acatcatcccttaacatatttttttaatgtcagggattaaagtgataatggaagtgtagagtcagagacttatttgtatttaatcctgaatcaaggacct 34263850  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
     ||||||| |||| |||| |||||||| | |||||||||||||||||    
T  34263849 ctgtgacagcgaggtgcagagtcaggggccaaagtgactatttgctc 34263803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 48574438 - 48574536
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacc 114  Q
    ||||||||| |||| | | |||||||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||| |||||||||||||    
T  48574438 acatcatcatttaaaagatttttttaacgtcaaggactaaagtgataacgaaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacc 48574536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 50753961 - 50753820
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | ||||||||||||| |||||||||||||||| |||||| | ||| ||  |||| ||| ||||||||| ||| | |||||||     
T  50753961 acatcatcacttaacagatttttttaacggcagggactaaagtgataacagaagtgtagagtcagaaacttgtttatatttaatcctgaattagggacct 50753862  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatt 157  Q
    |||||||| |||| |||| ||  |||||||||||||||||||    
T  50753861 atgtgacagcgaggtgcagagctagggactaaagtgactatt 50753820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 48808505 - 48808362
Alignment:
Q  21 atcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtg 120  Q
    ||||||||||||| |||||||||  |  |||||||||||| |||||||||||| ||||||| |||||||||||||||||| |||||||| |||| || |     
T  48808505 atcacttaacatatttttttaacatccgggactaaagtgacaacggaagtgcagagttaggaacttatttgtatttaatcctgagtcagagacctatcta 48808406  T
Q  121 acaacgagatgcacagtcagggac--taaagtgactatttgctc 162  Q
    ||| |||| |||| | ||||||||  |||||||| |||||||||    
T  48808405 acagcgagctgcagaatcagggactataaagtgattatttgctc 48808362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 55389448 - 55389592
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||||| | || |||||    ||||||||||||||||||||||| | ||| ||||||||| |||||||||||  |||||||  ||||     
T  55389448 acatcatcacttaacatattgttgtaacgttggggactaaagtgataacggaagtgtagagtcagggacttaattgtatttaattttgagtcaatgacct 55389547  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgc 160  Q
    |||||||| |||| |||| ||| |||||| |||||||||||||||    
T  55389548 atgtgacagcgaggtgcagagttagggaccaaagtgactatttgc 55389592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 47075337 - 47075476
Alignment:
Q  23 cacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgac 122  Q
    ||||||||| |||| ||||||| ||  |||||||||||||||||||||| | ||| ||||  || ||||||||||||| ||||| | ||||| |||||||    
T  47075337 cacttaacaaaattatttaacgtcagagactaaagtgataacggaagtgtagagtcaggggtttctttgtatttaatcttgagtgacggacctatgtgac 47075436  T
Q  123 aacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||||| |||| ||||| ||| ||||||||| ||||||||    
T  47075437 aacgaggtgcagagtcaaggattaaagtgaccatttgctc 47075476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 11773053 - 11773142
Alignment:
Q  39 ttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgacaacgag 128  Q
    |||||| || ||||||||||||||||||||||| | ||| || ||||||||||||||||||| ||||||||||||| |||||||| ||||    
T  11773053 ttaacgccagggactaaagtgataacggaagtgtagagtcagagacttatttgtatttaatcctgagtcagggacctatgtgacagcgag 11773142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 19115133 - 19115271
Alignment:
Q  23 cacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgac 122  Q
    ||||||||| |||| |||||||  | |||||||||| | |||||||||||| ||| | | |||| ||||||||||||| ||||| | ||||| |||||||    
T  19115133 cacttaacagaattatttaacgttagggactaaagtaaaaacggaagtgcagagtcatg-acttctttgtatttaatcctgagtgaaggacctatgtgac 19115231  T
Q  123 aacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    | |||| |||| ||||| | ||||||||||||||||||||    
T  19115232 atcgaggtgcagagtcacgaactaaagtgactatttgctc 19115271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 167
Target Start/End: Original strand, 49261550 - 49261664
Alignment:
Q  50 gactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgacaacgagatgcacagtcagggactaaag 149  Q
    ||||||||||||||||||| |||| |||||| |||||   ||||||||||| ||||||||||||| |||||||||| |  ||   | | | |||||||||    
T  49261550 gactaaagtgataacggaaatgcagagttagagactt---tgtatttaatcctgagtcagggacctatgtgacaacaatgtgtggaattatggactaaag 49261646  T
Q  150 tgactatttgctcctttt 167  Q
    ||||||||||||| ||||    
T  49261647 tgactatttgctcttttt 49261664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 53957817 - 53957673
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | |||||||||| || |||  ||| || ||| ||||||||| ||| |  |||||||||||||||| || ||||||||| |||     
T  53957817 acatcatcacttaacagatttttttaacgtcagggaa-aaattgttaagggaagtgcagagtcatagacttatttgtattta-tcctgagtcaggaacct 53957720  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||| ||| |||| |||| | ||| | ||||||||||||||||||||    
T  53957719 atgtaacagcgagttgcagaatcaagtactaaagtgactatttgctc 53957673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 40206016 - 40205934
Alignment:
Q  26 ttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtca 108  Q
    ||||||||||||||||||| ||| ||||||| |||||||||||||||| | | || ||||  ||||| ||||||| |||||||    
T  40206016 ttaacataattttttaacgccaatgactaaactgataacggaagtgcacattcagagactactttgtttttaatcgtgagtca 40205934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 19331183 - 19331117
Alignment:
Q  85 ttatttgtatttaatcatgagtcagggacccatgtgacaacgagatgcacagtcagggactaaagtg 151  Q
    |||||||||||||||| ||||||||||||| |||||||| | || |||| ||||||| || ||||||    
T  19331183 ttatttgtatttaatcctgagtcagggacctatgtgacagcaaggtgcagagtcaggaacgaaagtg 19331117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 40206919 - 40207009
Alignment:
Q  19 tcatcacttaacataattttttaacggcaagg-actaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtca 108  Q
    |||||| |||||||||||||||||||  |||| |||||| ||||||||||| |||| | | | ||||| |||| || ||||||||||||||    
T  40206919 tcatcagttaacataattttttaacgttaagggactaaactgataacggaaatgcacattcaaggactaatttatacttaatcatgagtca 40207009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 135
Target Start/End: Complemental strand, 47427959 - 47427885
Alignment:
Q  61 taacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgacaacgagatgcaca 135  Q
    ||||| ||||||| ||| |||||||| ||||||||||||  ||||||| ||||| |||||||| |||| ||||||    
T  47427959 taacgtaagtgcacagtcagggacttctttgtatttaattttgagtcaaggacctatgtgacagcgaggtgcaca 47427885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 48809634 - 48809690
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgca 73  Q
    |||||||||||||||| | ||||||| || || |||||||||||||||||||||||||    
T  48809634 acatcatcacttaacagattttttta-cgtcatggactaaagtgataacggaagtgca 48809690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 158
Target Start/End: Original strand, 26652583 - 26652725
Alignment:
Q  15 gacatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacc 114  Q
    |||||||||  |||||| ||||||| ||| | |||||||||| ||||||| ||  | || | | | |||||  ||||||||| ||| | ||||||||||     
T  26652583 gacatcatcgattaacagaattttt-aacagtaaggactaaactgataacagagatacacattcatggactattttgtattttatcctaagtcagggact 26652681  T
Q  115 catgtgacaacgagatgcacagtcagggactaaagtgactattt 158  Q
     | |||||| ||||||||| ||||||||||  ||||||||||||    
T  26652682 aaagtgacagcgagatgcaaagtcagggacccaagtgactattt 26652725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 36827454 - 36827509
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtg 71  Q
    |||||||||||||||| |||| ||||||  ||  ||||||||||||||||||||||    
T  36827454 acatcatcacttaacaaaattatttaacatcagagactaaagtgataacggaagtg 36827509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 612358 - 612230
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    ||||||||||||||||||||| ||||| |  | | ||||||||||||||  |||| || | | | |||||| ||||||||||||  ||| ||  ||| |     
T  612358 acatcatcacttaacataattatttaatgtgaggaactaaagtgataacataagtacacattcacggacttctttgtatttaattttgaatcgaggatct 612259  T
Q  116 atgtgacaacgagatgcacagtcagggac 144  Q
     ||| |||||||| |||| ||||||||||    
T  612258 ttgtaacaacgaggtgcatagtcagggac 612230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 53771035 - 53771174
Alignment:
Q  23 cacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgac 122  Q
    ||||||||| |||| ||||||| ||| |||||||||||||||||||||||| ||| |||| ||| ||||||||||||  ||||||||||||| |||||||    
T  53771035 cacttaacagaattatttaacgtcaatgactaaagtgataacggaagtgcagagtcaggggcttctttgtatttaattctgagtcagggacctatgtgac 53771134  T
Q  123 aacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||||| |||| ||||||||||||||||||| ||||||||    
T  53771135 aacgaggtgcagagtcagggactaaagtgaccatttgctc 53771174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 42278193 - 42278047
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | |||||||||| || ||| ||||||||||||||||||||| ||| ||| ||||||||||||||||||  ||||||||||||     
T  42278193 acatcatcacttaacagatttttttaacgtcagggattaaagtgataacggaagtgcagagtcaggaacttatttgtatttaatcccgagtcagggacct 42278094  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||||||| | || |||| | ||| ||||||||||||||||||||||    
T  42278093 atgtgacagcaagctgcagaatcaaggactaaagtgactatttgctc 42278047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 47878463 - 47878608
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||| ||||||| | ||| |||||| || ||||||||||||||||||||||| | ||| ||||||||||||||||||||||  ||||||||||||     
T  47878463 acatcatcgcttaacagattttattaacgtcatggactaaagtgataacggaagtgtagagtcagggacttatttgtatttaatccagagtcagggacct 47878562  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgct 161  Q
    |||| ||| |||| |||| |||||||||  ||||||||||||||||    
T  47878563 atgtaacagcgaggtgcagagtcagggatcaaagtgactatttgct 47878608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 47874704 - 47874566
Alignment:
Q  19 tcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatg 118  Q
    |||||| |||||||| |||||||||  || ||||||||||||||||||||||||| | | |||||||||||||||||||||| ||||||||||||| |||    
T  47874704 tcatcatttaacatatttttttaacatca-ggactaaagtgataacggaagtgcagaatcagggacttatttgtatttaatcttgagtcagggacctatg 47874606  T
Q  119 tgacaacgagatgcacagtcagggactaaagtgactattt 158  Q
    ||| | |||| |||| | |||| |||||||||||||||||    
T  47874605 tgatagcgagctgcagaatcagagactaaagtgactattt 47874566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 31844865 - 31844720
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| | ||||| |||| ||  ||| |||||||||| ||||||| | |||||||||||| ||||||||||||| |||||||||||||     
T  31844865 acatcatcacttaacaga-tttttaaacgacagtgaccaaagtgataagggaagtgtagagttagggacttgtttgtatttaatcctgagtcagggacct 31844767  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||||||| |||| |||| ||  ||||||||||||||||||||||||    
T  31844766 atgtgacagcgaggtgcagagctagggactaaagtgactatttgctc 31844720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 26172931 - 26173062
Alignment:
Q  26 ttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgacaac 125  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||| || ||||||||||||||||||| ||||||| |||||  | |||||      
T  26172931 ttaacataattttttaacggcatggactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcttgagtcaaggacctttctgacagt 26173030  T
Q  126 gagatgcacagtcagggactaaagtgactatt 157  Q
     || |||| |||  ||||||||||||||||||    
T  26173031 aaggtgcatagttggggactaaagtgactatt 26173062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 48740006 - 48740145
Alignment:
Q  23 cacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgac 122  Q
    ||||||||| |||| ||||||| || |||||||||||||||| |||||||| |||| ||||||| |||||||||||| |||||||||||| | | |||||    
T  48740006 cacttaacagaattatttaacgtcagggactaaagtgataacagaagtgcagagttggggacttctttgtatttaattatgagtcagggatctacgtgac 48740105  T
Q  123 aacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    || ||| |||| || || ||||||||||||| ||||||||    
T  48740106 aatgaggtgcagagacatggactaaagtgaccatttgctc 48740145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 26170784 - 26170638
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| ||||||||||| ||| ||||||||||||||| ||||||||| ||| ||| |||||||||||||||||| | ||||||  ||      
T  26170784 acatcatcacttaacaaaattttttaacagcatggactaaagtgataatggaagtgcagagtaaggaacttatttgtatttaatcttaagtcagatactt 26170685  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
     ||| |||||||| |||| |||||| ||||||| | |||||||||||    
T  26170684 ttgtaacaacgaggtgcaaagtcagagactaaactaactatttgctc 26170638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 168
Target Start/End: Complemental strand, 39869064 - 39868914
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    ||||||||||||||||||||| ||||||| ||  |||||||||||||||||||||||| |||   | |||| |||||||||||| ||||||||||||||     
T  39869064 acatcatcacttaacataattatttaacgtcagagactaaagtgataacggaagtgcagagt--cgaacttgtttgtatttaattatgagtcagggacct 39868967  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctcctttta 168  Q
     ||| ||| |||| |||| |||||| ||||||||| || |||| ||| |||||    
T  39868966 ttgtaacagcgaggtgcagagtcagagactaaagtaacaatttactcatttta 39868914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 54574532 - 54574423
Alignment:
Q  53 taaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgacaacgagatgcacagtcagggactaaagtga 152  Q
    ||||||||||||||||||||| ||||| | |||||||||||||||||| |||||||| |||| |||||||| ||||||||| ||| ||| |  ||| |||    
T  54574532 taaagtgataacggaagtgcagagttaagaacttatttgtatttaatcctgagtcagagacctatgtgacagcgagatgcagagtgaggaagcaaaatga 54574433  T
Q  153 ctatttgctc 162  Q
    ||||||||||    
T  54574432 ctatttgctc 54574423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 4703196 - 4703342
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||| | |||| ||||| | ||  |||||||||||||||||||||| | ||| |  ||||| ||||||||||||  ||||| |||||||     
T  4703196 acatcatcacttaatagaattatttaatgccagagactaaagtgataacggaagtgtacagtcaaagacttctttgtatttaattctgagttagggacct 4703295  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||||||| ||||||| | ||||||  ||||||||||| ||||||||    
T  4703296 atgtgacagcgagatgtagagtcagtaactaaagtgacaatttgctc 4703342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 50694893 - 50694795
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacc 114  Q
    |||||||||||||||| |||||||||||| || ||||||||| ||||||||||||||| | | ||  |||||||| ||||||||  |||||||||||||    
T  50694893 acatcatcacttaacagaattttttaacgtcagggactaaagagataacggaagtgcagaatcagaaacttatttatatttaattttgagtcagggacc 50694795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 21623096 - 21623224
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    ||||||| | ||||||||||| ||||||| |  |||||||||||||||| |||||||| | | | |||||  ||||||||||||| ||| ||||||| |     
T  21623096 acatcattagttaacataattatttaacgtcggggactaaagtgataacagaagtgcacattcaaggactattttgtatttaatcctgaatcagggaaca 21623195  T
Q  116 atgtgacaacgagatgcacagtcagggac 144  Q
     ||||||||||||||||| ||||| ||||    
T  21623196 ttgtgacaacgagatgcagagtcaaggac 21623224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 163
Target Start/End: Complemental strand, 53770470 - 53770330
Alignment:
Q  23 cacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgac 122  Q
    ||||||||| |||| ||||||||||  ||||| |||||||| ||||||||| ||| |  ||||| ||||||||||||  ||||||||| ||| ||||||     
T  53770470 cacttaacagaattatttaacggcagagactagagtgataatggaagtgcagagtcatagacttctttgtatttaattctgagtcaggaacctatgtgaa 53770371  T
Q  123 aacgagatgcacagtcagggactaaagtgactatttgctcc 163  Q
      |||| |||| |||||| |||||||||||| |||| ||||    
T  53770370 tgcgaggtgcagagtcagagactaaagtgaccatttactcc 53770330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 4701907 - 4701817
Alignment:
Q  18 atcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtca 108  Q
    |||||||||||||| |||| ||||||  || |||||||||||||| |||||||||| |||  ||||||| ||||||||||||||| |||||    
T  4701907 atcatcacttaacagaattatttaacatcagggactaaagtgatagcggaagtgcatagtcggggacttctttgtatttaatcataagtca 4701817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 21621967 - 21621869
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacc 114  Q
    ||||||||| ||||||||||| ||||||  || ||||||||||||||||||||||||| | | |  ||||  ||||||||||||| |||||||||||||    
T  21621967 acatcatcagttaacataattatttaacatcagggactaaagtgataacggaagtgcacattcaatgactattttgtatttaatcctgagtcagggacc 21621869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 31844934 - 31845080
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||||| ||||||||| |||||||| ||| |||||||||||||| | |||     | || ||||||||||||| ||||||||  |||     
T  31844934 acatcatcacttaacatatttttttaactgcaaggacgaaaatgataacggaagtgtagagtctaaaatttgtttgtatttaatcctgagtcagaaacct 31845033  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    || ||||||| ||||||| | |||   |||||||||| |||||||||    
T  31845034 atatgacaacaagatgcaaaatcaaaaactaaagtgagtatttgctc 31845080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 42391868 - 42392003
Alignment:
Q  19 tcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagt--tagggacttatttgtatttaatcatgagtcagggaccca 116  Q
    |||||| |||| | || ||||||||| |  |||||||| |||||| ||||||||| | |  |||||||| ||||||||||||||||||||||| |||| |    
T  42391868 tcatcagttaatagaagtttttaacgtctgggactaaactgataaaggaagtgcacattattagggactaatttgtatttaatcatgagtcagagaccta 42391967  T
Q  117 tgtgacaacgagatgcacagtcagggactaaagtga 152  Q
    |||||||  ||| |||  |||||| |||||||||||    
T  42391968 tgtgacagtgaggtgcggagtcagagactaaagtga 42392003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 26685408 - 26685528
Alignment:
Q  23 cacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgac 122  Q
    ||||||||| |||| ||||| | ||  |||||||||||||||||||||||| ||| | |||||| | |||||||||     ||| ||||||| |||||||    
T  26685408 cacttaacagaattatttaatgtcagagactaaagtgataacggaagtgcatagtcaaggacttctatgtatttaa-----agtgagggacctatgtgac 26685502  T
Q  123 aacgagatgcacagtcagggactaaa 148  Q
    | |||| |||| ||||||||||||||    
T  26685503 agcgaggtgcagagtcagggactaaa 26685528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 162
Target Start/End: Complemental strand, 44158638 - 44158502
Alignment:
Q  26 ttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgacaac 125  Q
    ||||||||||| |||||||  | ||| |||||| |||||  ||||  | ||| |||||||| ||||||||||||| ||||||||| |||  ||| |||||    
T  44158638 ttaacataattatttaacgttagggattaaagtaataacaaaagtatagagtcagggacttctttgtatttaatcctgagtcaggaacctctgtaacaac 44158539  T
Q  126 gagatgcacagtcagggactaaagtgactatttgctc 162  Q
    ||| |||| |||| ||| ||||| |||| ||||||||    
T  44158538 gaggtgcagagtcgggggctaaattgaccatttgctc 44158502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 162
Target Start/End: Original strand, 19051253 - 19051356
Alignment:
Q  59 gataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgacaacgagatgcacagtcagggactaaagtgactattt 158  Q
    ||||||| ||||| | ||| || ||||| |||||||||||||  ||||||| ||||  |||| ||||||| || | ||||||||||||||||||| ||||    
T  19051253 gataacgaaagtgtagagtcagagacttctttgtatttaatctcgagtcagtgacctttgtgccaacgaggtgtagagtcagggactaaagtgaccattt 19051352  T
Q  159 gctc 162  Q
    ||||    
T  19051353 gctc 19051356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 19050382 - 19050297
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatca 101  Q
    |||||||||||||| | |||| ||||||| |   |||||||||||||||||||||||| |||  | ||||| ||||||||||||||    
T  19050382 acatcatcacttaatagaattatttaacgtcggagactaaagtgataacggaagtgcagagtccgagacttctttgtatttaatca 19050297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 54574822 - 54574881
Alignment:
Q  54 aaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggac 113  Q
    ||||||||||| |||||||| |||||| || |||||||||||||||| ||||||| ||||    
T  54574822 aaagtgataacagaagtgcagagttagagatttatttgtatttaatcctgagtcaaggac 54574881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 32244415 - 32244361
Alignment:
Q  19 tcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgca 73  Q
    |||||||||||||||||| |||||||  | |||| ||||||||||||||||||||    
T  32244415 tcatcacttaacataattatttaacgttatggaccaaagtgataacggaagtgca 32244361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 24753540 - 24753597
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgca 73  Q
    ||||||||| |||||| |||| |||||||  || ||||||||||||||| ||||||||    
T  24753540 acatcatcagttaacaaaattatttaacgcgaatgactaaagtgataacagaagtgca 24753597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 79217 - 79073
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||||| |||| ||||||| ||| ||||||||||||| |||| ||||||||| | |||||| ||| ||||||||||||||||| |||||     
T  79217 acatcatcacttaacaaaattatttaacgtcaaagactaaagtgatatcggaggtgcaaagtcaaggacttctttttatttaatcatgagtcaaggacct 79118  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgc 160  Q
    |||||||| |||| |||| ||||||| |||||| |||||||||||    
T  79117 atgtgacagcgaggtgcagagtcaggaactaaattgactatttgc 79073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 79662 - 79808
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||| | |||| ||||||| ||| ||||||| ||||||  ||| |||| ||| |  ||||| ||||||||||||||||||||||| ||      
T  79662 acatcatcacttaataaaattatttaacgtcaaagactaaaatgataatagaaatgcagagtcaaagacttctttgtatttaatcatgagtcaggaactt 79761  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||| |||||||| |||  ||||||||| ||||||||||||||||||    
T  79762 atgtaacaacgaggtgccgagtcagggattaaagtgactatttgctc 79808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 74357 - 74433
Alignment:
Q  81 ggacttatttgtatttaatcatgagtcagggacccatgtgacaacgagatgcacagtcagggactaaagtgactatt 157  Q
    |||||| ||||||||||||||||||| ||||||| ||||||||  ||| |||| |||||||||||||| ||||||||    
T  74357 ggacttctttgtatttaatcatgagttagggacctatgtgacagtgagttgcagagtcagggactaaactgactatt 74433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 49 - 161
Target Start/End: Complemental strand, 116166 - 116054
Alignment:
Q  49 ggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgacaacgagatgcacagtcagggactaaa 148  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||| |||||||| |||| |||| | | ||| ||||||    
T  116166 ggactaaagtgataacggaagtgcatagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacagcgagctgcagaatgaggaactaaa 116067  T
Q  149 gtgactatttgct 161  Q
    |||||||||||||    
T  116066 gtgactatttgct 116054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 30748143 - 30747997
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||||||||||||| |   |||||||||||||  |||||||||||||||| ||||| | ||| || ||||| ||||||||||||| | |||||||||||     
T  30748143 acatcatcacttaatagttttttttaacggcagcgactaaagtgataacgaaagtgtagagtcagagacttgtttgtatttaatcctaagtcagggacct 30748044  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    |||||||| |||| |||| | ||||||||||||||||||||||||||    
T  30748043 atgtgacagcgaggtgcagaatcagggactaaagtgactatttgctc 30747997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 31219092 - 31218953
Alignment:
Q  23 cacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgac 122  Q
    ||||||| | |||| ||||||  || ||| ||||||||||||||||||||| ||| ||| |||| ||||||||||||| ||||| | ||||| |||||||    
T  31219092 cacttaagagaattatttaacatcagggattaaagtgataacggaagtgcagagtcaggaacttctttgtatttaatcctgagttaaggacctatgtgac 31218993  T
Q  123 aacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    | |||| |||| |||||| || ||||||||| ||||||||    
T  31218992 agcgaggtgcagagtcagagattaaagtgaccatttgctc 31218953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 31219146 - 31219281
Alignment:
Q  23 cacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgac 122  Q
    ||||||| | |||| ||||||| ||  ||||||||||||||||||||||   ||| ||| |||| ||||||||||||| ||||| |  |||| |||||||    
T  31219146 cacttaagagaattatttaacgtcagagactaaagtgataacggaagtgtcgagtcaggaacttctttgtatttaatcctgagttaatgacctatgtgac 31219245  T
Q  123 aacgagatgcacagtcagggactaaagtgactattt 158  Q
    | |||| |||| ||||||||| ||||||||| ||||    
T  31219246 agcgaggtgcagagtcagggattaaagtgaccattt 31219281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 23508092 - 23507947
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccc 115  Q
    |||| ||||||||||| ||   ||||||| || ||||||||||||||| ||||||| ||||| |  || || ||||||||||||| ||| ||||| |||     
T  23508092 acattatcacttaacaaaaaaatttaacgacagggactaaagtgataaaggaagtgtaaagtcatagatttgtttgtatttaatcctgaatcaggaacct 23507993  T
Q  116 atgtgacaacgagatgcacagtcagggactaaagtgactatttgctc 162  Q
    ||||||||  ||| || | || ||| |||||||||||||||||||||    
T  23507992 atgtgacagggaggtgtagag-cagagactaaagtgactatttgctc 23507947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 158
Target Start/End: Original strand, 12676459 - 12676591
Alignment:
Q  26 ttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatgtgacaac 125  Q
    ||||||||| ||||||| | ||  ||||||| |||||||  ||||||| | |||| ||||  ||||||||||||| |||| ||| ||||  |||||||||    
T  12676459 ttaacataaatttttaatgccagagactaaactgataacaaaagtgcacatttagagactactttgtatttaatcctgagacagagaccattgtgacaac 12676558  T
Q  126 gagatgcacagtcagggactaaagtgactattt 158  Q
    ||| |||| ||||||  |  |||||||||||||    
T  12676559 gaggtgcagagtcagatatcaaagtgactattt 12676591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 24621218 - 24621104
Alignment:
Q  19 tcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggacccatg 118  Q
    |||||| |||| | || ||||||| | ||| ||||||| |||||||||||| ||  | |||| || || ||||||||||||||||||||| |||||  |     
T  24621218 tcatcagttaatagaagtttttaatgtcaatgactaaactgataacggaagcgcgcatttagagatttctttgtatttaatcatgagtcaaggaccttta 24621119  T
Q  119 tgacaacgagatgca 133  Q
    ||| |||||||||||    
T  24621118 tgataacgagatgca 24621104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 6468832 - 6468883
Alignment:
Q  88 tttgtatttaatcatgagtcagggacccatgtgacaacgagatgcacagtca 139  Q
    |||||||||||||||||||||||||||  ||||||| ||| ||||| |||||    
T  6468832 tttgtatttaatcatgagtcagggacctttgtgacagcgatatgcagagtca 6468883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 19645993 - 19645948
Alignment:
Q  163 cttttagtttcctaaaccattgccctgaggatactggttaccaaga 208  Q
    ||||||||||||| ||||||||||||||||| | |||||| |||||    
T  19645993 cttttagtttccttaaccattgccctgaggacaatggttagcaaga 19645948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 10855950 - 10855902
Alignment:
Q  16 acatcatcacttaacataattttttaacggcaaggactaaagtgataac 64  Q
    |||| |||||||||||||||| ||||||| || ||||||||| ||||||    
T  10855950 acatgatcacttaacataattatttaacgtcagggactaaagcgataac 10855902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 5742 - 5601
Alignment:
Q  17 catcatcacttaacataattttttaacggcaaggactaaagtgataacggaagtgcaaagttagggacttatttgtatttaatcatgagtcagggaccca 116  Q
    ||||||||| |||||||||| ||||||| ||  |||||||||||||||||||||| | ||| |||||||| ||||||||||||  |||||||| |||       
T  5742 catcatcacataacataattatttaacgccagagactaaagtgataacggaagtgtagagtcagggacttctttgtatttaattctgagtcagagacatt 5643  T
Q  117 tgtgacaacgagatgcacagtcagggactaaagtgactattt 158  Q
    ||| |||||||| |||| ||| || |||||||||||| ||||    
T  5642 tgtcacaacgaggtgcaaagtgagtgactaaagtgacaattt 5601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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