View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1291_low_76 (Length: 262)
Name: NF1291_low_76
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1291_low_76 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 2621692 - 2621925
Alignment:
| Q |
1 |
aacaacgcgaggcagtgatgatgtttttaattataacaatgtcgttgaagatgttgttactaaatttgtagttgatgatgataatagtaaaaacaagaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2621692 |
aacaacgcgaggcagtgatgatgtttttaattataacaatgtcgttgaagatgttgttactaaatttgtagttgatgatgataatagtaaaaacaagaag |
2621791 |
T |
|
| Q |
101 |
gttgaggttccttcctttaaaaggttgttggcaatgaatggaccagagtggaagcaaacatgcttgggctgtataaatgcgattttagtcggtgcaattc |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2621792 |
gttgaggttccttcctttcaaaggttgttggcaatgaatggaccagagtggaagcaaacatgcttgggctgtataaatgcgattttagtcggtgcaattc |
2621891 |
T |
|
| Q |
201 |
aacctgtgttttcatttggattggggtcggttat |
234 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
2621892 |
aacctgtgttttcatttggattggggtcggttat |
2621925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 3 - 234
Target Start/End: Original strand, 2590127 - 2590370
Alignment:
| Q |
3 |
caacgcgaggcagtgatgatgtttttaattataacaatgtcgttgaagatgttgttactaaatttgtagttgatgatgat---------aatagtaaaaa |
93 |
Q |
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|||| ||||||| |||||||||||| || ||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| | |
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| T |
2590127 |
caacacgaggcaatgatgatgttttaaactataacaatgttgttgaagatgttgctactaaatttgtagttgatgatgatgataatgataatagtaaaga |
2590226 |
T |
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| Q |
94 |
caaga---aggttgaggttccttcctttaaaaggttgttggcaatgaatggaccagagtggaagcaaacatgcttgggctgtataaatgcgattttagtc |
190 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||| | |
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| T |
2590227 |
caagaagaaggttgaggttccttcctttaaatggttgttggcaatgaatggaccagagtggaagcaaacatgtttgggttgtataaatgcggttttattt |
2590326 |
T |
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| Q |
191 |
ggtgcaattcaacctgtgttttcatttggattggggtcggttat |
234 |
Q |
| |
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| T |
2590327 |
ggtgcaattcaacctgtgtattcttttggattggggtcggttat |
2590370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 104 - 234
Target Start/End: Complemental strand, 2571199 - 2571069
Alignment:
| Q |
104 |
gaggttccttcctttaaaaggttgttggcaatgaatggaccagagtggaagcaaacatgcttgggctgtataaatgcgattttagtcggtgcaattcaac |
203 |
Q |
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|||||||| || ||| |||||||||||| |||||||| ||||||||||||||| |||| ||||| ||| | |||||| ||||| ||||||| ||||||| |
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| T |
2571199 |
gaggttccatcgtttcgaaggttgttggccatgaatgggccagagtggaagcaagcatgtttgggttgttttaatgcggttttattcggtgcgattcaac |
2571100 |
T |
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| Q |
204 |
ctgtgttttcatttggattggggtcggttat |
234 |
Q |
| |
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|||||| ||| |||| | ||||||||||||| |
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| T |
2571099 |
ctgtgtattcgtttgcaatggggtcggttat |
2571069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 96 - 232
Target Start/End: Complemental strand, 2674695 - 2674559
Alignment:
| Q |
96 |
agaaggttgaggttccttcctttaaaaggttgttggcaatgaatggaccagagtggaagcaaacatgcttgggctgtataaatgcgattttagtcggtgc |
195 |
Q |
| |
|
||||||| |||||||||| ||| |||||||||||| ||||||| || || ||||||||| |||| ||||| ||||||||||| ||||| ||||||| |
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| T |
2674695 |
agaaggtcaaggttccttcgtttcgaaggttgttggctatgaatgtgcctgaatggaagcaagcatgtttgggttgtataaatgcagttttattcggtgc |
2674596 |
T |
|
| Q |
196 |
aattcaacctgtgttttcatttggattggggtcggtt |
232 |
Q |
| |
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|||||||||||| | ||| |||| ||||||||||||| |
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| T |
2674595 |
aattcaacctgtatattcgtttgcattggggtcggtt |
2674559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 207
Target Start/End: Complemental strand, 2642858 - 2642747
Alignment:
| Q |
96 |
agaaggttgaggttccttcctttaaaaggttgttggcaatgaatggaccagagtggaagcaaacatgcttgggctgtataaatgcgattttagtcggtgc |
195 |
Q |
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||||||| ||||| |||| ||| ||||||||||||||||||||| ||||||||||||||| |||| ||||| |||||||||||| ||||| ||||||| |
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| T |
2642858 |
agaaggtcaaggtttcttcgtttcaaaggttgttggcaatgaatgtgccagagtggaagcaagcatgtttgggttgtataaatgcggttttattcggtgc |
2642759 |
T |
|
| Q |
196 |
aattcaacctgt |
207 |
Q |
| |
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|||| |||||| |
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| T |
2642758 |
gattcgacctgt |
2642747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 2436309 - 2436341
Alignment:
| Q |
27 |
ttaattataacaatgtcgttgaagatgttgtta |
59 |
Q |
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|||||||||||||||| |||||||||||||||| |
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|
| T |
2436309 |
ttaattataacaatgttgttgaagatgttgtta |
2436341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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