View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1291_low_77 (Length: 262)
Name: NF1291_low_77
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1291_low_77 |
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| [»] scaffold1696 (1 HSPs) |
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| [»] scaffold1585 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 22099760 - 22099986
Alignment:
| Q |
17 |
gagcaggaccacagaccattaaagctgatatcattgcaaacaaaaccaaacaccatcttaaccatgatgatgatgatgaatcagatcttcctcttgacat |
116 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22099760 |
gagcaggaccacacaccattaaagctgatatcattgcaaacaaaaccaaacaccatcttaaccatgatgatgatgatgaatcagatcttcctcttgacat |
22099859 |
T |
|
| Q |
117 |
tctttctttatcagatctaattcttcttctatcttctcaattc------------agaaagaaagaagctggttggttatatggtgttctttgccgattt |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22099860 |
tctttctttatcagatctaattcttcttctatcttctcaattcagaaagaaacaaagaaagaaagaagctggttggttatatggtg---tttgccgattt |
22099956 |
T |
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| Q |
205 |
gatttgaacaagtcctagtaacagtgttgt |
234 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
22099957 |
gatttgaacaagtcctagtaacagtgttgt |
22099986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 38161511 - 38161731
Alignment:
| Q |
17 |
gagcaggaccacagaccattaaagctgatatcattgcaaacaaaaccaaacaccatcttaaccatgatgatgatgatgaatcagatcttcctcttgacat |
116 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
38161511 |
gagcaggaccacacaccattaaagctgatatcattgcaaacaaaaccaaacaccatcttaaccatga---tgatgatgaatcagatctccctcttgacat |
38161607 |
T |
|
| Q |
117 |
tctttctttatcagatctaattcttcttctatcttctcaattcagaaagaaa---------gaagctggttggttatatggtgttctttgccgatttgat |
207 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| | |||||||| |||| |||||||||||||| |
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| T |
38161608 |
tctttctttatcagatctaattcttcttctattttctcaattcagaaacaaacaaacaaacaaagagtgctggttata---tgttgtttgccgatttgat |
38161704 |
T |
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| Q |
208 |
ttgaacaagtcctagtaacagtgttgt |
234 |
Q |
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||||||||||| ||||||||||||||| |
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| T |
38161705 |
ttgaacaagtcgtagtaacagtgttgt |
38161731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1696 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold1696
Description:
Target: scaffold1696; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 21 - 230
Target Start/End: Complemental strand, 1420 - 1213
Alignment:
| Q |
21 |
aggaccacagaccattaaagctgatatcattgcaaacaaaaccaaacaccatcttaaccatgatgatgatgatgaatcagatcttcctcttgacattctt |
120 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||| ||| |
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| T |
1420 |
aggaccacacaccattaaagctgatatcattgcaaacaaaaccaaactccatcttaaccatgatgatgatga---atcagatctccctcttgacatactt |
1324 |
T |
|
| Q |
121 |
tctttatcagatctaattcttcttctatcttctcaattc----agaaagaaagaagctggttggttatatggtgttctttgccgatttgatttgaacaag |
216 |
Q |
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|||||||||||||||||||||||||||| |||||||||| | ||| |||||| || |||||||| |||| |||||||||||||||||||| || |
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| T |
1323 |
tctttatcagatctaattcttcttctattttctcaattcataaacaaacaaagaaagaggctggttata---tgttgtttgccgatttgatttgaacgag |
1227 |
T |
|
| Q |
217 |
tcctagtaacagtg |
230 |
Q |
| |
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|| ||||||||||| |
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| T |
1226 |
tcgtagtaacagtg |
1213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1585 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold1585
Description:
Target: scaffold1585; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 24 - 234
Target Start/End: Original strand, 1137 - 1345
Alignment:
| Q |
24 |
accacagaccattaaagctgatatcattgcaaacaaaaccaaacaccatcttaaccatgatgatgatgatgaatcagatcttcctcttgacattctttct |
123 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||| |||||| |
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| T |
1137 |
accacacaccattaaagctgatatcattgcaaacaaaaccaaactccatcttaaccatga---tgatgatgaatcagatctccctcttgacatactttct |
1233 |
T |
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| Q |
124 |
ttatcagatctaattcttcttctatcttctcaattc----agaaagaaagaagctggttggttatatggtgttctttgccgatttgatttgaacaagtcc |
219 |
Q |
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|||||| |||||||||||||||||| |||||||||| | ||| |||||| || |||||||| |||| |||||||||||||||||||| ||| |
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| T |
1234 |
ttatcaaatctaattcttcttctattttctcaattcataaacaaacaaagaaagaggctggttata---tgttgtttgccgatttgatttgaacgagttg |
1330 |
T |
|
| Q |
220 |
tagtaacagtgttgt |
234 |
Q |
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||||||||||||||| |
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| T |
1331 |
tagtaacagtgttgt |
1345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 171
Target Start/End: Complemental strand, 44220374 - 44220222
Alignment:
| Q |
17 |
gagcaggaccacagaccattaaagctgatatcattgcaaacaaaaccaaacaccatcttaaccatgatgatg-atgatgaatcagatcttcctcttgaca |
115 |
Q |
| |
|
||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||| |||||||||| |
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| T |
44220374 |
gagcagggccacacaccattaaagccgatatcattgcaaacaaaaccaaacaccatcttaaccatgatgatgaacgaagaatcagatctccctcttgaca |
44220275 |
T |
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| Q |
116 |
ttctttctttatcagatctaattcttcttctatcttctcaattcagaaagaaagaa |
171 |
Q |
| |
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|| |||||||||||||||||| ||||||||||||||||||||| ||| |||||| |
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| T |
44220274 |
ttttttctttatcagatctaa---ttcttctatcttctcaattcacaaacaaagaa |
44220222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 20 - 171
Target Start/End: Original strand, 18296706 - 18296855
Alignment:
| Q |
20 |
caggaccacagaccattaaagctgatatcattgcaaacaaaaccaaacaccatcttaaccatgatgatga-tgatgaatcagatcttcctcttgacattc |
118 |
Q |
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|
|||||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| |
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| T |
18296706 |
caggaccacacaccattaaagccgatatcatcgcaaataaaaccaaacaccatcttaaccatgatgatgaccgaagaatcagatctccctcttgacattt |
18296805 |
T |
|
| Q |
119 |
tttctttatcagatctaattcttcttctatcttctcaattcagaaagaaagaa |
171 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| ||| |||||| |
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| T |
18296806 |
tttctttatcagatctaa---ttcttctatcttctcaattcacaaacaaagaa |
18296855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 18296888 - 18296927
Alignment:
| Q |
195 |
ttgccgatttgatttgaacaagtcctagtaacagtgttgt |
234 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||| |
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| T |
18296888 |
ttgccgatttgattttaacaagtcgtagtaacagtgttgt |
18296927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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