View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1291_low_82 (Length: 254)

Name: NF1291_low_82
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1291_low_82
NF1291_low_82
[»] chr2 (2 HSPs)
chr2 (71-234)||(43522924-43523087)
chr2 (105-202)||(4113276-4113372)
[»] chr8 (1 HSPs)
chr8 (71-234)||(12869295-12869458)
[»] chr5 (4 HSPs)
chr5 (71-234)||(14007178-14007341)
chr5 (74-203)||(23123491-23123620)
chr5 (168-234)||(23123412-23123478)
chr5 (171-234)||(23123364-23123427)
[»] chr7 (2 HSPs)
chr7 (71-234)||(41594320-41594480)
chr7 (71-203)||(42452749-42452878)
[»] chr3 (2 HSPs)
chr3 (71-234)||(22512000-22512160)
chr3 (171-234)||(22511952-22512015)


Alignment Details
Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 71 - 234
Target Start/End: Original strand, 43522924 - 43523087
Alignment:
Q  71 aacagaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctccat 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43522924 aacagaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctccat 43523023  T
Q  171 ctcaacctgttaaagttccaagaattgaagaagacataactcatatgactcaacctgatgatgt 234  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43523024 ctcaacctattaaagttccaagaattgaagaagacataactcatatgactcaacctgttgatgt 43523087  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 202
Target Start/End: Original strand, 4113276 - 4113372
Alignment:
Q  105 ttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctccatctcaacctgttaaagttccaagaattgaagaa 202  Q
    |||||||||||| ||| | || || ||||| ||||||||||||||||||| ||||  ||  | |||| |||||||||||||||  |||||||||||||    
T  4113276 ttgatcattttt-taaaaggaaagtttgtgggagtgaaagagatgaacaaagaatatcttatacatcacaacctgttaaagttttaagaattgaagaa 4113372  T

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Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 71 - 234
Target Start/End: Complemental strand, 12869458 - 12869295
Alignment:
Q  71 aacagaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctccat 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12869458 aacagaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctccat 12869359  T
Q  171 ctcaacctgttaaagttccaagaattgaagaagacataactcatatgactcaacctgatgatgt 234  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  12869358 ctcaacctattaaagtttcaagaattgaagaagacataactcatatgactcaacctgttgatgt 12869295  T

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Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 71 - 234
Target Start/End: Original strand, 14007178 - 14007341
Alignment:
Q  71 aacagaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctccat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14007178 aacagaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagtttgtgagagtgaaagagatgaacaaggaatgactcctccat 14007277  T
Q  171 ctcaacctgttaaagttccaagaattgaagaagacataactcatatgactcaacctgatgatgt 234  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14007278 ctcaacctattaaagttccaagaattgaagaagacataactcatatgactcaacctgttgatgt 14007341  T

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Target: chr5; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 74 - 203
Target Start/End: Complemental strand, 23123620 - 23123491
Alignment:
Q  74 agaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctccatctc 173  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23123620 agaaaagttaagaagaagaagagtataacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctccatctc 23123521  T
Q  174 aacctgttaaagttccaagaattgaagaag 203  Q
    |||||||||||||| | | |||||||||||    
T  23123520 aacctgttaaagtttccataattgaagaag 23123491  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 23123478 - 23123412
Alignment:
Q  168 catctcaacctgttaaagttccaagaattgaagaagacataactcatatgactcaacctgatgatgt 234  Q
    ||||||||||| || | |||||||||||| |||||||||||| ||||||||||||||||| ||||||    
T  23123478 catctcaacctattgatgttccaagaattaaagaagacataattcatatgactcaacctgttgatgt 23123412  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 23123427 - 23123364
Alignment:
Q  171 ctcaacctgttaaagttccaagaattgaagaagacataactcatatgactcaacctgatgatgt 234  Q
    ||||||||||| | |||||||||||||||||||||||||||||||  ||||||| || ||||||    
T  23123427 ctcaacctgttgatgttccaagaattgaagaagacataactcatacaactcaacatgttgatgt 23123364  T

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Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 71 - 234
Target Start/End: Original strand, 41594320 - 41594480
Alignment:
Q  71 aacagaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctccat 170  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41594320 aacagaaaagttaaga---agaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctccat 41594416  T
Q  171 ctcaacctgttaaagttccaagaattgaagaagacataactcatatgactcaacctgatgatgt 234  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41594417 ctcaacctattaaagttccaagaattgaagaagacataactcatatgactcaacctgttgatgt 41594480  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 203
Target Start/End: Original strand, 42452749 - 42452878
Alignment:
Q  71 aacagaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctccat 170  Q
    ||||||||||||||||   |||||||| |||||||| ||||||||||||||| || |  |||||||||||| |||||||||||||||||||||| |||||    
T  42452749 aacagaaaagttaaga---agaagagtataacacttaatcatttttataagaggaaactttgtgagagtgacagagatgaacaaggaatgactcttccat 42452845  T
Q  171 ctcaacctgttaaagttccaagaattgaagaag 203  Q
    |||| |||||||||||||  |||||||||||||    
T  42452846 ctcatcctgttaaagttctcagaattgaagaag 42452878  T

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Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 71 - 234
Target Start/End: Complemental strand, 22512160 - 22512000
Alignment:
Q  71 aacagaaaagttaagaagaagaagagtgtaacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctccat 170  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22512160 aacagaaaagttaagaagaaga---gtataacacttgatcatttttataagaagagagcttgtgagagtgaaagagatgaacaaggaatgactcctccat 22512064  T
Q  171 ctcaacctgttaaagttccaagaattgaagaagacataactcatatgactcaacctgatgatgt 234  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  22512063 ctcaacctgttaaagttccatgaattgaagaagacataactcatatgactcaacctgttgatgt 22512000  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 22512015 - 22511952
Alignment:
Q  171 ctcaacctgttaaagttccaagaattgaagaagacataactcatatgactcaacctgatgatgt 234  Q
    ||||||||||| | |||||||||||||||||||||||||||||||  |||||||||| ||||||    
T  22512015 ctcaacctgttgatgttccaagaattgaagaagacataactcatacaactcaacctgttgatgt 22511952  T

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