View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1292-Insertion-1 (Length: 848)
Name: NF1292-Insertion-1
Description: NF1292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1292-Insertion-1 |
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| [»] chr2 (4 HSPs) |
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| [»] scaffold2084 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 764; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 764; E-Value: 0
Query Start/End: Original strand, 8 - 848
Target Start/End: Complemental strand, 40551170 - 40550333
Alignment:
| Q |
8 |
ctaacttatccgaatttgggcccaatagcagtaacatggtggctacctcgtcgcatcaagctgcatttccgaatttagcatgttattcagatgatgagtg |
107 |
Q |
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||||||||| || ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40551170 |
ctaacttattcggatttgggcctaattgcagtaacatggtggctacctcgtcgcatcaagctgcatttccgaatttagcatgttattcagatgatgagtg |
40551071 |
T |
|
| Q |
108 |
accagacaattgtcctaacacctgaccatgatatagctttgtttagtttggaggttatattgaggctgatggaagtgtcttgaatttattttgtttgctg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40551070 |
accagacaattgtcctaacacctgaccatgatatagctttgtttagtttggaggttatattgaggctgatggaagtgtcttgaatttattttgtttgctg |
40550971 |
T |
|
| Q |
208 |
ggctaactgtttgctctaattattgagagtaaaatgcatataggtaatcaagggtagcttcttctttagctcattgatattctgatattcatctaacaaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40550970 |
ggctaactgtttgctctaattattgagagtaaaatgcatataggtaatcaagggtagcttcttctttagctcattgatattctgatattcatctaacaaa |
40550871 |
T |
|
| Q |
308 |
ttattattaattaacaatatgaggtgacttttgtnnnnnnnnnnnngtaatcaaaattctgtctgattttcatcggaactggcttgtgagcttggctatt |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
40550870 |
ttattattaattaacaatatgaggtgacttttgtaaaaaaaaa---gtaatcaaaattctgtctgattttcatcggaactggctcgtgaacttggctatt |
40550774 |
T |
|
| Q |
408 |
cagtgatctatattgttatctataccctatgtgaatgatcgcagaaacatatacttgtgcagtaattgaatctggttatgatttcttttttgtttgaatt |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40550773 |
cagtgatctatattgttatctataccctatgtgaatgatcgcagaaacatatacttgtgcagtaattgaatctggttatgatttcttttttgtttgaatt |
40550674 |
T |
|
| Q |
508 |
tcttaatatacataaataaaattctatattaaaacacatgatattaacacatttcctttctcttaagcaaaaggaaaccactgtgcatacctattacctt |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40550673 |
tcttaatatacataaataaaattctatattaaaacacatgatattaacacatttcctttctcttaagcaaaaggaaaccactgtgcatacctattacctt |
40550574 |
T |
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| Q |
608 |
acaggataaatacattgcaatactagtaaaacattgtactaatgaaattctataggaaggggagtaccatcccaatccttaaggcattcaaacattggat |
707 |
Q |
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| T |
40550573 |
acaggataaatacattgcaatactagtaaaacattgtactaatgaaattctataggaaggggagtaccatcccaatccttaaggcattcaaacattggat |
40550474 |
T |
|
| Q |
708 |
ctattatctttccaagagtaattgcattcaagactttatcaaaatcttctcctggtgatttaattttctcaccagttaaaaattcagtccccaattcctc |
807 |
Q |
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| T |
40550473 |
caattatctttccaagagtaattgcattcaaaactttatcaaaatcttctcctggtgatttaattttctcaccagttaaaaattcaatccccaattcctc |
40550374 |
T |
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| Q |
808 |
tctaacaaacttatacaatggataagacctgcattccttga |
848 |
Q |
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| T |
40550373 |
tctaacaaacttatacaatggataagacctgcattccttga |
40550333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 648 - 848
Target Start/End: Complemental strand, 40560222 - 40560020
Alignment:
| Q |
648 |
aatgaaattctataggaaggg--gagtaccatcccaatccttaaggcattcaaacattggatctattatctttccaagagtaattgcattcaagacttta |
745 |
Q |
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||||||| |||||||||||| | |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
40560222 |
aatgaaaatctataggaaggtacgtgtaccatctcaatccttaaggcattcaaacattggatcaattatctttccaagagtaattgcattcaaaacttta |
40560123 |
T |
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| Q |
746 |
tcaaaatcttctcctggtgatttaattttctcaccagttaaaaattcagtccccaattcctctctaacaaacttatacaatggataagacctgcattcct |
845 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
40560122 |
tcaaaatcttctcctggtgatttaactttttcaccagttaaaaattcagtccacaattcctctctaacaaacttatacaacggatacaacctgcattcct |
40560023 |
T |
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| Q |
846 |
tga |
848 |
Q |
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||| |
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| T |
40560022 |
tga |
40560020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 183 - 321
Target Start/End: Complemental strand, 40568282 - 40568143
Alignment:
| Q |
183 |
tgtcttgaatttattttgtttgctgggctaactgtttgc-tctaattattgagagtaaaatgcatataggtaatcaagggtagcttcttcttt-agctca |
280 |
Q |
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|||||||||||| | || ||| ||||||||||||||||| | |||||||||| ||||||||| |||||||||||||| || |||||| ||||| |||||| |
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| T |
40568282 |
tgtcttgaatttttatt-tttactgggctaactgtttgcatttaattattgatagtaaaatgtatataggtaatcaa-ggcagcttcatctttaagctca |
40568185 |
T |
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| Q |
281 |
ttgatattctgatattcatctaacaaattatt-attaattaa |
321 |
Q |
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||||||||| |||||| ||||| ||||||||| ||||||||| |
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| T |
40568184 |
ttgatattccgatatttatctatcaaattattaattaattaa |
40568143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 40568392 - 40568288
Alignment:
| Q |
8 |
ctaacttatccgaatttgggcccaatagcagtaacatggtggctacctcgtcgcatcaagctgcatttccgaatttagcatgttattcagatgatgagtg |
107 |
Q |
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||||||||||| || ||||||||||||||||| ||||||| | |||||| ||||||||||||| || |||||||| ||||| |||||||| ||||| |
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| T |
40568392 |
ctaacttatccagatctgggcccaatagcagtagtgtggtggccaactcgtcacatcaagctgcatctcagaatttagtatgtttatcagatgacgagtg |
40568293 |
T |
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| Q |
108 |
accag |
112 |
Q |
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||||| |
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| T |
40568292 |
accag |
40568288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2084 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold2084
Description:
Target: scaffold2084; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 703 - 810
Alignment:
| Q |
9 |
taacttatccgaatttgggcccaatagcagtaacatggtggctacctcgtcgcatcaagctgcatttccgaatttagcatgttattcagatgatgagtga |
108 |
Q |
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|||||||||| |||||| |||||||||||||| | ||||||| || |||||||| |||||||| ||||||||||| ||||| || |||||||||| | |
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| T |
703 |
taacttatccagatttggatccaatagcagtaacgtagtggctaacttgtcgcatctagctgcatctccgaatttagtatgtttatcggatgatgagtta |
802 |
T |
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| Q |
109 |
ccagacaa |
116 |
Q |
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|||||||| |
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| T |
803 |
ccagacaa |
810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 797 - 846
Target Start/End: Original strand, 28183755 - 28183804
Alignment:
| Q |
797 |
cccaattcctctctaacaaacttatacaatggataagacctgcattcctt |
846 |
Q |
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||||| ||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
28183755 |
cccaactcctctctaacaaacttgtacaatggataagacctacattcctt |
28183804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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